General information
| Regulator | AbrC3 |
|---|---|
| Gene identifier | SCO4596 - SCD20.14c |
| Family | NarL |
| Regulation type | Activator |
| Function | Positive response regulator of antibiotic production |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 27 sites.
Position Frequency Matrix
PFM| T | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
|---|---|---|---|---|---|---|---|---|---|---|
| G | 27 | 0 | 0 | 16 | 27 | 9 | 27 | 15 | 0 | 13 |
| C | 0 | 0 | 0 | 11 | 0 | 18 | 0 | 0 | 19 | 14 |
| A | 0 | 27 | 27 | 0 | 0 | 0 | 0 | 12 | 8 | 0 |
Position Weight Matrix
PWM| T | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 |
|---|---|---|---|---|---|---|---|---|---|---|
| G | 2.14 | -1.32 | -1.32 | 1.47 | 2.14 | 0.79 | 2.14 | 1.39 | -1.32 | 1.22 |
| C | -1.32 | -1.32 | -1.32 | 1.02 | -1.32 | 1.62 | -1.32 | -1.32 | 1.68 | 1.31 |
| A | -1.32 | 2.14 | 2.14 | -1.32 | -1.32 | -1.32 | -1.32 | 1.12 | 0.66 | -1.32 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
Loading...
| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| 354 | + | GAAGGGGGCG | ChIP-chip | S. Rico et al. (2014) | |
| -329 | - | GGTCGCCTTC | ChIP-chip | S. Rico et al. (2014) | |
| 1113 | + | GAAGGCGGCG | ChIP-chip | S. Rico et al. (2014) | |
| -240 | - | GTTCGCCTTC | ChIP-chip | S. Rico et al. (2014) | |
| -387 | - | GGCCGCGTTC | ChIP-chip | S. Rico et al. (2014) | |
| -674 | + | GAACGCGACC | ChIP-chip | S. Rico et al. (2014) | |
| -137 | - | CTTCCCGTTC | ChIP-chip | S. Rico et al. (2014) | |
| 72 | + | GAAGGCGACC | ChIP-chip | S. Rico et al. (2014) | |
| -213 | - | GGTCGCGTTC | ChIP-chip | S. Rico et al. (2014) | |
| -975 | + | GAAGGGGGCG | ChIP-chip | S. Rico et al. (2014) | |
| 1134 | - | CTTCGCCTTC | ChIP-chip | S. Rico et al. (2014) | |
| -1261 | + | GAACGGGACG | ChIP-chip | S. Rico et al. (2014) | |
| -777 | + | GAACGCGGCG | ChIP-chip | S. Rico et al. (2014) | |
| -54 | - | CTCCCCCTTC | ChIP-chip | S. Rico et al. (2014) | |
| -803 | + | GAAGGCGGAC | ChIP-chip | S. Rico et al. (2014) | |
| 3138 | - | CGCCCCGTTC | ChIP-chip | S. Rico et al. (2014) | |
| 1140 | + | GAAGGCGGCC | ChIP-chip | S. Rico et al. (2014) | |
| -519 | + | GAACGCGGCC | ChIP-chip | S. Rico et al. (2014) | |
| -306 | - | GGCCGCCTTC | ChIP-chip | S. Rico et al. (2014) | |
| -411 | - | CGCCGCGTTC | ChIP-chip | S. Rico et al. (2014) | |
| -321 | + | GAAGGGGACG | ChIP-chip | S. Rico et al. (2014) | |
| -294 | + | GAAGGCGGCG | ChIP-chip | S. Rico et al. (2014) | |
| -369 | - | GGCCGCGTTC | ChIP-chip | S. Rico et al. (2014) | |
| -53 | + | GAAGGCGACC | ChIP-chip | S. Rico et al. (2014) | |
| -26 | - | GTTCCCGTTC | ChIP-chip | S. Rico et al. (2014) | |
| -46 | + | GAAGGGGAAG | ChIP-chip | S. Rico et al. (2014) | |
| -112 | + | GAAGGCGGAC | ChIP-chip | S. Rico et al. (2014) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|---|---|---|---|---|
| 506547:506557 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 673316:673326 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 1392927:1392937 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 1404572:1404582 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 1594030:1594040 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 1641168:1641178 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 2005938:2005948 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 2121162:2121172 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 2376232:2376242 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 2645486:2645496 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 2974963:2974973 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 3042236:3042246 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 3207011:3207021 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 3389664:3389674 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 3423811:3423821 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 3650467:3650477 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 4085902:4085912 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 4101656:4101666 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 4251353:4251363 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 4310210:4310220 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 4589749:4589759 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 4875966:4875976 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 5007424:5007434 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 5063402:5063412 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 5257326:5257336 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 5415335:5415345 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 5829831:5829841 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 5883779:5883789 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 6027685:6027695 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 6402265:6402275 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 6494972:6494982 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 6654099:6654109 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 6708611:6708621 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 6744771:6744781 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 7090397:7090407 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 7358521:7358531 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 7705948:7705958 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 7739002:7739012 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 7757341:7757351 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 7758845:7758855 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 8004669:8004679 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 8255122:8255132 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 8383537:8383547 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 8545874:8545884 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 8555208:8555218 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 165439:165449 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 221383:221393 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 221383:221393 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 165439:165449 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 188571:188581 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 221383:221393 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 164047:164057 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 340182:340192 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 878040:878050 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 2020147:2020157 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 2160578:2160588 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 2516451:2516461 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 2628819:2628829 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 3020810:3020820 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 3040951:3040961 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 3526919:3526929 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 3699192:3699202 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 4724322:4724332 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 4738948:4738958 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 4891901:4891911 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 5179996:5180006 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 5450765:5450775 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 5453212:5453222 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 5709415:5709425 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 5899020:5899030 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 5948916:5948926 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 6346642:6346652 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 6395927:6395937 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 6815600:6815610 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 7210810:7210820 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 7385434:7385444 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 8245045:8245055 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 197810:197820 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 409710:409720 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 561763:561773 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 715779:715789 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 1004243:1004253 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 1236354:1236364 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 1575640:1575650 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 1695053:1695063 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 1719847:1719857 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 1927646:1927656 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 2153379:2153389 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 2716367:2716377 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 2970846:2970856 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 3196938:3196948 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 3346955:3346965 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 4128303:4128313 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 4412969:4412979 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 4591551:4591561 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 4697601:4697611 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 4789748:4789758 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 4957886:4957896 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 5382600:5382610 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 5467113:5467123 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 5590503:5590513 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 6441281:6441291 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 6525146:6525156 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 6958982:6958992 | - | 18.15668213 | GGCCGCCTTC | pwm | |
| 7680114:7680124 | + | 18.15668213 | GAAGGCGGCC | pwm | |
| 8172357:8172367 | - | 18.15668213 | GGCCGCCTTC | pwm |