General information
Regulator | AbrC3 |
---|---|
Gene identifier | SCO4596 - SCD20.14c |
Family | NarL |
Regulation type | Activator |
Function | Positive response regulator of antibiotic production |
Organism | Streptomyces coelicolor |
External links
Sequence logo
LogoPosition Frequency Matrix
PFMT | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
---|---|---|---|---|---|---|---|---|---|---|
G | 27 | 0 | 0 | 16 | 27 | 9 | 27 | 15 | 0 | 13 |
C | 0 | 0 | 0 | 11 | 0 | 18 | 0 | 0 | 19 | 14 |
A | 0 | 27 | 27 | 0 | 0 | 0 | 0 | 12 | 8 | 0 |
Position Weight Matrix
PWMT | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 |
---|---|---|---|---|---|---|---|---|---|---|
G | 2.14 | -1.32 | -1.32 | 1.47 | 2.14 | 0.79 | 2.14 | 1.39 | -1.32 | 1.22 |
C | -1.32 | -1.32 | -1.32 | 1.02 | -1.32 | 1.62 | -1.32 | -1.32 | 1.68 | 1.31 |
A | -1.32 | 2.14 | 2.14 | -1.32 | -1.32 | -1.32 | -1.32 | 1.12 | 0.66 | -1.32 |
Animate |
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Node Repulsion | |
Ideal Edge Length | |
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Gene ID | Location | Orientation | Binding sequence | Method | Reference |
---|---|---|---|---|---|
SCO0167 | 354 | + | GAAGGGGGCG | ChIP-chip | S. Rico et al. (2014) |
SCO0951 | -329 | - | GGTCGCCTTC | ChIP-chip | S. Rico et al. (2014) |
SCO1391 | 1113 | + | GAAGGCGGCG | ChIP-chip | S. Rico et al. (2014) |
SCO3263 | -240 | - | GTTCGCCTTC | ChIP-chip | S. Rico et al. (2014) |
SCO3334 | -387 | - | GGCCGCGTTC | ChIP-chip | S. Rico et al. (2014) |
SCO4123 | -674 | + | GAACGCGACC | ChIP-chip | S. Rico et al. (2014) |
SCO4596 | -137 | - | CTTCCCGTTC | ChIP-chip | S. Rico et al. (2014) |
SCO5085 | 72 | + | GAAGGCGACC | ChIP-chip | S. Rico et al. (2014) |
SCO5236 | -213 | - | GGTCGCGTTC | ChIP-chip | S. Rico et al. (2014) |
SCO5330 | -975 | + | GAAGGGGGCG | ChIP-chip | S. Rico et al. (2014) |
SCO5332 | 1134 | - | CTTCGCCTTC | ChIP-chip | S. Rico et al. (2014) |
SCO5632 | -1261 | + | GAACGGGACG | ChIP-chip | S. Rico et al. (2014) |
SCO5691 | -777 | + | GAACGCGGCG | ChIP-chip | S. Rico et al. (2014) |
SCO5912 | -54 | - | CTCCCCCTTC | ChIP-chip | S. Rico et al. (2014) |
SCO5966 | -803 | + | GAAGGCGGAC | ChIP-chip | S. Rico et al. (2014) |
SCO6273 | 3138 | - | CGCCCCGTTC | ChIP-chip | S. Rico et al. (2014) |
SCO6732 | 1140 | + | GAAGGCGGCC | ChIP-chip | S. Rico et al. (2014) |
SCO6820 | -519 | + | GAACGCGGCC | ChIP-chip | S. Rico et al. (2014) |
SCO6941 | -306 | - | GGCCGCCTTC | ChIP-chip | S. Rico et al. (2014) |
SCO6951 | -411 | - | CGCCGCGTTC | ChIP-chip | S. Rico et al. (2014) |
SCO6992 | -321 | + | GAAGGGGACG | ChIP-chip | S. Rico et al. (2014) |
SCO7077 | -294 | + | GAAGGCGGCG | ChIP-chip | S. Rico et al. (2014) |
SCO7545 | -369 | - | GGCCGCGTTC | ChIP-chip | S. Rico et al. (2014) |
SCO0736 | -53 | + | GAAGGCGACC | ChIP-chip | S. Rico et al. (2014) |
SCO2113 | -26 | - | GTTCCCGTTC | ChIP-chip | S. Rico et al. (2014) |
SCO3328 | -46 | + | GAAGGGGAAG | ChIP-chip | S. Rico et al. (2014) |
SCO6809 | -112 | + | GAAGGCGGAC | ChIP-chip | S. Rico et al. (2014) |
Region | Location | Orientation | Score | Binding sequence | Method |
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