General information
| Regulator | AdpA |
|---|---|
| Gene identifier | SGR_4742 - NULL |
| Family | AraC |
| Regulation type | Activator/repressor |
| Function | Controls both secondary metabolism and morphological differentiation |
| Organism | Streptomyces griseus |
External links
Sequence logo
Logo
Based on 51 sites.
Position Frequency Matrix
PFM| T | 34 | 1 | 6 | 0 | 7 | 5 | 2 | 15 | 23 | 19 |
|---|---|---|---|---|---|---|---|---|---|---|
| G | 6 | 47 | 41 | 0 | 13 | 32 | 31 | 1 | 1 | 4 |
| C | 8 | 0 | 0 | 49 | 28 | 6 | 2 | 0 | 2 | 15 |
| A | 1 | 1 | 2 | 0 | 1 | 6 | 14 | 33 | 23 | 11 |
Position Weight Matrix
PWM| T | 1.67 | -1.05 | -0.17 | -1.32 | -0.04 | -0.31 | -0.83 | 0.70 | 1.19 | 0.96 |
|---|---|---|---|---|---|---|---|---|---|---|
| G | -0.17 | 2.08 | 1.91 | -1.32 | 0.55 | 1.59 | 1.55 | -1.05 | -1.05 | -0.46 |
| C | 0.07 | -1.32 | -1.32 | 2.14 | 1.43 | -0.17 | -0.83 | -1.32 | -0.83 | 0.70 |
| A | -1.05 | -1.05 | -0.83 | -1.32 | -1.05 | -0.17 | 0.63 | 1.63 | 1.19 | 0.38 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
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| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| -36 | - | TGGCGGGTTC | DNAse footprinting | H. Yamazaki et al. (2000) | |
| -250 | + | TGGCGCGATC | DNAse footprinting | H. Yamazaki et al. (2003) | |
| -220 | - | CGTCGGCAAG | DNAse footprinting | H. Yamazaki et al. (2003) | |
| -119 | + | TGGCCATTTC | DNAse footprinting | H. Yamazaki et al. (2003) | |
| -99 | - | AGCGGCGTTA | DNAse footprinting | H. Yamazaki et al. (2003) | |
| 46 | + | TGGCCAGATT | DNAse footprinting | H. Yamazaki et al. (2003) | |
| 85 | - | GGACCGGTCT | DNAse footprinting | H. Yamazaki et al. (2003) | |
| -71 | + | TGGCCGGTTT | DNAse footprinting | J. Kato et al. (2002) | |
| -273 | + | TGGCCAGATT | DNAse footprinting | J. Kato et al. (2002) | |
| -225 | + | CGGCCGGAAT | DNAse footprinting | H. Yamazaki et al. (2003) | |
| -68 | + | GGGCCGAATA | DNAse footprinting | H. Yamazaki et al. (2003) | |
| -68 | + | TGGCCGAAAT | DNAse footprinting | J. Kato et al. (2005) | |
| -69 | + | TGGCCGAAAA | DNAse footprinting | J. Kato et al. (2005) | |
| -149 | + | GGGCGCGAAT | DNAse footprinting | A. Tomono et al. (2005) | |
| -382 | + | TAGCAAGTAC | DNAse footprinting | A. Tomono et al. (2005) | |
| -152 | + | TGGCCGAAAG | DNAse footprinting | A. Tomono et al. (2005) | |
| -1 | + | AGTCGACCTT | DNAse footprinting | A. Tomono et al. (2005) | |
| -141 | + | CGTCGAATAC | DNAse footprinting | A. Tomono et al. (2005) | |
| -430 | + | TGGCCGATCT | EMSA | A. Higo et al. (2011) | |
| -403 | + | TGGCCTGATG | EMSA | A. Higo et al. (2011) | |
| -366 | + | TGTCTTATTT | EMSA | A. Higo et al. (2011) | |
| -159 | - | AATCACGCCA | DNAse footprinting | H. Yamazaki et al. (2004) | |
| -152 | + | GAACAGGCCA | DNAse footprinting | H. Yamazaki et al. (2004) | |
| -449 | + | GATCCCGCCA | DNAse footprinting | H. Yamazaki et al. (2004) | |
| -223 | - | TTTCACGCCG | DNAse footprinting | H. Yamazaki et al. (2004) | |
| -115 | + | TATTCGGCCC | DNAse footprinting | H. Yamazaki et al. (2004) | |
| -127 | - | AAACCGGCCA | DNAse footprinting | H. Yamazaki et al. (2004) | |
| -99 | + | CGGCTCGAAC | EMSA | S. Hirano et al. (2006) | |
| -68 | + | GGGCGGGTTA | EMSA | G. Akanuma et al. (2009) | |
| -60 | - | CGGCCGGAAT | EMSA | G. Akanuma et al. (2009) | |
| -70 | + | TGGCTCGGAT | EMSA | G. Akanuma et al. (2009) | |
| -90 | + | TGTCCGGATT | EMSA | G. Akanuma et al. (2009) | |
| -220 | - | TGGCTGGAAC | EMSA | G. Akanuma et al. (2009) | |
| -65 | + | TTGCGACAAC | EMSA | G. Akanuma et al. (2009) | |
| -35 | - | TGGCCGGATT | EMSA | G. Akanuma et al. (2009) | |
| -95 | - | GGGCGGGAAG | EMSA | G. Akanuma et al. (2009) | |
| -170 | + | TGGCCGAAAA | EMSA | G. Akanuma et al. (2009) | |
| -50 | + | TGTCCGGTTT | EMSA | G. Akanuma et al. (2009) | |
| -45 | - | TGGCGGAAAC | EMSA | G. Akanuma et al. (2009) | |
| -55 | + | AGGCTGGATA | EMSA | G. Akanuma et al. (2009) | |
| -63 | + | TGTCCGAAAA | EMSA | A. Higo et al. (2012) | |
| -97 | + | TGGCCGGATT | EMSA | A. Higo et al. (2012) | |
| -245 | + | TGGCCGGAAC | EMSA | A. Higo et al. (2012) | |
| -60 | + | TGGCCGGAAA | EMSA | A. Higo et al. (2012) | |
| -166 | + | TGGCCGAAAA | EMSA | A. Higo et al. (2012) | |
| -46 | + | TGGCCCGAAT | EMSA | A. Higo et al. (2012) | |
| -67 | + | CGGCTGGTTT | EMSA | A. Higo et al. (2012) | |
| -109 | - | TGACCGAAAA | DNAse footprinting | A. Tomono et al. (2005) | |
| -83 | + | TGGCCGTTGC | DNAse footprinting | A. Tomono et al. (2005) | |
| -70 | - | CGGCTGATTC | DNAse footprinting | A. Tomono et al. (2005) | |
| -83 | + | TGGCGCGATC | DNAse footprinting | A. Tomono et al. (2005) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|---|---|---|---|---|
| 90114:90124 | - | 15.26350446 | AATCCCGCCA | pwm | |
| 190828:190838 | - | 16.14163246 | ATTCCGGCCA | pwm | |
| 501368:501378 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 537312:537322 | + | 15.55364861 | TGGCCGGATA | pwm | |
| 547472:547482 | - | 15.26350446 | ATTCCCGCCA | pwm | |
| 645287:645297 | - | 15.55364861 | TTTCCGGCCA | pwm | |
| 1144911:1144921 | - | 15.21603485 | ATTTCGGCCA | pwm | |
| 1149657:1149667 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 1160866:1160876 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 1361533:1361543 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 1411580:1411590 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 1423358:1423368 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 1490224:1490234 | + | 15.21603485 | TGGCCGAAAT | pwm | |
| 1764007:1764017 | + | 16.14163246 | TGGCCGGATT | pwm | |
| 1771884:1771894 | - | 15.21603485 | AATTCGGCCA | pwm | |
| 2011566:2011576 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 2248966:2248976 | - | 15.26350446 | AATCCCGCCA | pwm | |
| 2376350:2376360 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 2376350:2376360 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 2518396:2518406 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 2546770:2546780 | + | 16.14163246 | TGGCCGGATT | pwm | |
| 2706696:2706706 | - | 16.14163246 | ATTCCGGCCA | pwm | |
| 2722792:2722802 | + | 15.55364861 | TGGCCGGATA | pwm | |
| 3016194:3016204 | + | 15.21603485 | TGGCCGAATT | pwm | |
| 3344216:3344226 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 3870846:3870856 | - | 15.55364861 | TATCCGGCCA | pwm | |
| 4038628:4038638 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 4148371:4148381 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 4148551:4148561 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 4336570:4336580 | - | 15.55364861 | TTTCCGGCCA | pwm | |
| 4433378:4433388 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 5012820:5012830 | - | 15.55364861 | TATCCGGCCA | pwm | |
| 5140944:5140954 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 5147893:5147903 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 5708711:5708721 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 5922371:5922381 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 6107754:6107764 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 6418491:6418501 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 6616685:6616695 | + | 16.14163246 | TGGCCGGAAT | pwm | |
| 6733539:6733549 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 6939735:6939745 | - | 15.21603485 | AATTCGGCCA | pwm | |
| 7081566:7081576 | - | 16.14163246 | ATTCCGGCCA | pwm | |
| 7149412:7149422 | - | 15.26350446 | AATCCCGCCA | pwm | |
| 7586235:7586245 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 7773363:7773373 | - | 16.14163246 | ATTCCGGCCA | pwm | |
| 8070720:8070730 | - | 15.55364861 | TTTCCGGCCA | pwm | |
| 8081701:8081711 | - | 15.21603485 | ATTTCGGCCA | pwm | |
| 8081738:8081748 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 8223752:8223762 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 8256551:8256561 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 8294469:8294479 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 8483641:8483651 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 179936:179946 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 91387:91397 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 183374:183384 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 279966:279976 | + | 15.55364861 | TGGCCGGATA | pwm | |
| 306811:306821 | + | 15.55364861 | TGGCCGGATA | pwm | |
| 330630:330640 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 534611:534621 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 543913:543923 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 752567:752577 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 820812:820822 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 878013:878023 | + | 16.14163246 | TGGCCGGATT | pwm | |
| 894442:894452 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 1118870:1118880 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 1155004:1155014 | - | 16.14163246 | AATCCGGCCA | pwm | |
| 1270312:1270322 | - | 16.14163246 | AATCCGGCCA | pwm | |
| 1327057:1327067 | + | 16.14163246 | TGGCCGGATT | pwm | |
| 1393769:1393779 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 1410018:1410028 | - | 15.55364861 | TTTCCGGCCA | pwm | |
| 1465588:1465598 | + | 15.21603485 | TGGCCGAAAT | pwm | |
| 1557260:1557270 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 1589441:1589451 | + | 15.26350446 | TGGCGGGAAT | pwm | |
| 1912876:1912886 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 2234367:2234377 | - | 15.55364861 | TATCCGGCCA | pwm | |
| 2366867:2366877 | - | 16.14163246 | AATCCGGCCA | pwm | |
| 2416148:2416158 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 2502138:2502148 | - | 15.55364861 | TTTCCGGCCA | pwm | |
| 2513806:2513816 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 2513829:2513839 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 2544298:2544308 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 2605279:2605289 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 2678505:2678515 | - | 15.21603485 | AATTCGGCCA | pwm | |
| 2712060:2712070 | - | 15.55364861 | TTTCCGGCCA | pwm | |
| 2858313:2858323 | + | 16.14163246 | TGGCCGGATT | pwm | |
| 3302588:3302598 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 3313900:3313910 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 3321350:3321360 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 3354510:3354520 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 3456259:3456269 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 4055173:4055183 | - | 16.14163246 | ATTCCGGCCA | pwm | |
| 4114582:4114592 | + | 15.21603485 | TGGCCGAATT | pwm | |
| 4131113:4131123 | - | 16.14163246 | AATCCGGCCA | pwm | |
| 4155039:4155049 | + | 15.26350446 | TGGCGGGAAT | pwm | |
| 4162057:4162067 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 4234915:4234925 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 4269078:4269088 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 4461408:4461418 | - | 15.55364861 | TATCCGGCCA | pwm | |
| 4579297:4579307 | + | 15.55364861 | TGGCCGGATA | pwm | |
| 4894218:4894228 | - | 15.21603485 | AATTCGGCCA | pwm | |
| 5227404:5227414 | + | 16.14163246 | TGGCCGGAAT | pwm | |
| 5276161:5276171 | - | 15.21603485 | ATTTCGGCCA | pwm | |
| 5282719:5282729 | - | 16.14163246 | AATCCGGCCA | pwm | |
| 5364825:5364835 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 5427074:5427084 | + | 16.14163246 | TGGCCGGAAT | pwm | |
| 5711057:5711067 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 5798870:5798880 | - | 16.14163246 | AATCCGGCCA | pwm | |
| 5973094:5973104 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 6016328:6016338 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 6040438:6040448 | - | 16.14163246 | ATTCCGGCCA | pwm | |
| 6040560:6040570 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 6072644:6072654 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 6086254:6086264 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 6118347:6118357 | + | 15.21603485 | TGGCCGAATT | pwm | |
| 6323515:6323525 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 6402938:6402948 | - | 16.14163246 | ATTCCGGCCA | pwm | |
| 6589577:6589587 | + | 15.55364861 | TGGCCGGATA | pwm | |
| 6631137:6631147 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 6633127:6633137 | - | 15.55364861 | TTTCCGGCCA | pwm | |
| 6861112:6861122 | - | 15.21603485 | AATTCGGCCA | pwm | |
| 7528442:7528452 | + | 15.26350446 | TGGCGGGAAT | pwm | |
| 7920759:7920769 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 7987324:7987334 | - | 16.14163246 | AATCCGGCCA | pwm | |
| 8242114:8242124 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 8284519:8284529 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 8346628:8346638 | - | 16.14163246 | AATCCGGCCA | pwm | |
| 8454532:8454542 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 458022:458032 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 502321:502331 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 538291:538301 | + | 15.26350446 | TGGCGGGATT | pwm | |
| 837646:837656 | - | 15.26350446 | ATTCCCGCCA | pwm | |
| 874082:874092 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 948133:948143 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 972928:972938 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 1015458:1015468 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 1204516:1204526 | - | 15.21603485 | ATTTCGGCCA | pwm | |
| 1419136:1419146 | - | 15.26350446 | ATTCCCGCCA | pwm | |
| 1584454:1584464 | - | 15.26350446 | ATTCCCGCCA | pwm | |
| 1634732:1634742 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 1736738:1736748 | - | 16.14163246 | ATTCCGGCCA | pwm | |
| 1922257:1922267 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 2072394:2072404 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 2075795:2075805 | - | 15.55364861 | TTTCCGGCCA | pwm | |
| 2170504:2170514 | + | 15.26350446 | TGGCGGGAAT | pwm | |
| 2359767:2359777 | + | 16.14163246 | TGGCCGGAAT | pwm | |
| 2647748:2647758 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 2716588:2716598 | - | 15.55364861 | TTTCCGGCCA | pwm | |
| 2718421:2718431 | - | 15.26350446 | AATCCCGCCA | pwm | |
| 2781633:2781643 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 2827983:2827993 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 2929602:2929612 | - | 15.26350446 | ATTCCCGCCA | pwm | |
| 3038598:3038608 | + | 16.14163246 | TGGCCGGAAT | pwm | |
| 3045544:3045554 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 3112437:3112447 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 3112917:3112927 | + | 16.14163246 | TGGCCGGATT | pwm | |
| 3268701:3268711 | - | 15.21603485 | AATTCGGCCA | pwm | |
| 3892196:3892206 | + | 16.14163246 | TGGCCGGATT | pwm | |
| 3966869:3966879 | + | 15.26350446 | TGGCGGGATT | pwm | |
| 4025562:4025572 | - | 15.55364861 | TTTCCGGCCA | pwm | |
| 4237531:4237541 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 4362482:4362492 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 4379778:4379788 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 4491713:4491723 | + | 15.26350446 | TGGCGGGATT | pwm | |
| 4748102:4748112 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 4755451:4755461 | - | 15.87739027 | GTTCCGGCCA | pwm | |
| 4908127:4908137 | - | 16.14163246 | ATTCCGGCCA | pwm | |
| 4908246:4908256 | - | 15.26350446 | ATTCCCGCCA | pwm | |
| 5096203:5096213 | + | 16.14163246 | TGGCCGGAAT | pwm | |
| 5117614:5117624 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 5513722:5513732 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 5528030:5528040 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 6039491:6039501 | - | 15.21603485 | ATTTCGGCCA | pwm | |
| 6219343:6219353 | + | 15.87739027 | TGGCCGGATC | pwm | |
| 6379716:6379726 | + | 15.55364861 | TGGCCGGAAA | pwm | |
| 6432934:6432944 | + | 15.26350446 | TGGCGGGATT | pwm | |
| 6657992:6658002 | + | 15.26350446 | TGGCGGGAAT | pwm | |
| 6803117:6803127 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 6887398:6887408 | + | 15.55364861 | TGGCCGGATA | pwm | |
| 6889226:6889236 | - | 15.55364861 | TTTCCGGCCA | pwm | |
| 6984813:6984823 | + | 16.14163246 | TGGCCGGAAT | pwm | |
| 7012550:7012560 | - | 15.55364861 | TATCCGGCCA | pwm | |
| 7076954:7076964 | - | 15.87739027 | GATCCGGCCA | pwm | |
| 7269357:7269367 | - | 15.55364861 | TTTCCGGCCA | pwm | |
| 7458528:7458538 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 7525623:7525633 | - | 16.14163246 | ATTCCGGCCA | pwm | |
| 7531234:7531244 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 7632270:7632280 | - | 15.55364861 | TTTCCGGCCA | pwm | |
| 7887739:7887749 | + | 15.87739027 | TGGCCGGAAC | pwm | |
| 8018435:8018445 | - | 16.14163246 | AATCCGGCCA | pwm | |
| 8129628:8129638 | + | 15.87739027 | TGGCCGGATC | pwm |