LogoMotif

General information

Regulator	AdpA
Gene identifier	SGR_4742 - NULL
Family	AraC
Regulation type	Activator/repressor
Function	Controls both secondary metabolism and morphological differentiation
Organism	Streptomyces griseus

External links

Sequence logo

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Based on 51 sites.

Position Frequency Matrix

PFM


T	34	1	6	0	7	5	2	15	23	19
G	6	47	41	0	13	32	31	1	1	4
C	8	0	0	49	28	6	2	0	2	15
A	1	1	2	0	1	6	14	33	23	11

Position Weight Matrix

PWM


T	1.67	-1.05	-0.17	-1.32	-0.04	-0.31	-0.83	0.70	1.19	0.96
G	-0.17	2.08	1.91	-1.32	0.55	1.59	1.55	-1.05	-1.05	-0.46
C	0.07	-1.32	-1.32	2.14	1.43	-0.17	-0.83	-1.32	-0.83	0.70
A	-1.05	-1.05	-0.83	-1.32	-1.05	-0.17	0.63	1.63	1.19	0.38

Predictions

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Score:

Animate
Node Repulsion
Ideal Edge Length

Curated binding sequences
Predicted binding sequences

Gene ID	Location	Orientation	Binding sequence	Method	Reference
SGR_4151	-36	-	TGGCGGGTTC	DNAse footprinting	H. Yamazaki et al. (2000)
SGR_3655	-250	+	TGGCGCGATC	DNAse footprinting	H. Yamazaki et al. (2003)
SGR_3655	-220	-	CGTCGGCAAG	DNAse footprinting	H. Yamazaki et al. (2003)
SGR_3655	-119	+	TGGCCATTTC	DNAse footprinting	H. Yamazaki et al. (2003)
SGR_3655	-99	-	AGCGGCGTTA	DNAse footprinting	H. Yamazaki et al. (2003)
SGR_3655	46	+	TGGCCAGATT	DNAse footprinting	H. Yamazaki et al. (2003)
SGR_3655	85	-	GGACCGGTCT	DNAse footprinting	H. Yamazaki et al. (2003)
SGR_2095	-71	+	TGGCCGGTTT	DNAse footprinting	J. Kato et al. (2002)
SGR_2095	-273	+	TGGCCAGATT	DNAse footprinting	J. Kato et al. (2002)
SGR_2393	-225	+	CGGCCGGAAT	DNAse footprinting	H. Yamazaki et al. (2003)
SGR_2393	-68	+	GGGCCGAATA	DNAse footprinting	H. Yamazaki et al. (2003)
SGR_1241	-68	+	TGGCCGAAAT	DNAse footprinting	J. Kato et al. (2005)
SGR_5505	-69	+	TGGCCGAAAA	DNAse footprinting	J. Kato et al. (2005)
SGR_370	-149	+	GGGCGCGAAT	DNAse footprinting	A. Tomono et al. (2005)
SGR_370	-382	+	TAGCAAGTAC	DNAse footprinting	A. Tomono et al. (2005)
SGR_5762	-152	+	TGGCCGAAAG	DNAse footprinting	A. Tomono et al. (2005)
SGR_5770	-1	+	AGTCGACCTT	DNAse footprinting	A. Tomono et al. (2005)
SGR_5770	-141	+	CGTCGAATAC	DNAse footprinting	A. Tomono et al. (2005)
SGR_4447	-430	+	TGGCCGATCT	EMSA	A. Higo et al. (2011)
SGR_4447	-403	+	TGGCCTGATG	EMSA	A. Higo et al. (2011)
SGR_4447	-366	+	TGTCTTATTT	EMSA	A. Higo et al. (2011)
SGR_6559	-159	-	AATCACGCCA	DNAse footprinting	H. Yamazaki et al. (2004)
SGR_5960	-152	+	GAACAGGCCA	DNAse footprinting	H. Yamazaki et al. (2004)
SGR_6071	-449	+	GATCCCGCCA	DNAse footprinting	H. Yamazaki et al. (2004)
SGR_6071	-223	-	TTTCACGCCG	DNAse footprinting	H. Yamazaki et al. (2004)
SGR_2393	-115	+	TATTCGGCCC	DNAse footprinting	H. Yamazaki et al. (2004)
SGR_2095	-127	-	AAACCGGCCA	DNAse footprinting	H. Yamazaki et al. (2004)
SGR_551	-99	+	CGGCTCGAAC	EMSA	S. Hirano et al. (2006)
SGR_1350	-68	+	GGGCGGGTTA	EMSA	G. Akanuma et al. (2009)
SGR_1503	-60	-	CGGCCGGAAT	EMSA	G. Akanuma et al. (2009)
SGR_1542	-70	+	TGGCTCGGAT	EMSA	G. Akanuma et al. (2009)
SGR_2418	-90	+	TGTCCGGATT	EMSA	G. Akanuma et al. (2009)
SGR_2446	-220	-	TGGCTGGAAC	EMSA	G. Akanuma et al. (2009)
SGR_2648	-65	+	TTGCGACAAC	EMSA	G. Akanuma et al. (2009)
SGR_3532	-35	-	TGGCCGGATT	EMSA	G. Akanuma et al. (2009)
SGR_3840	-95	-	GGGCGGGAAG	EMSA	G. Akanuma et al. (2009)
SGR_3840	-170	+	TGGCCGAAAA	EMSA	G. Akanuma et al. (2009)
SGR_5809	-50	+	TGTCCGGTTT	EMSA	G. Akanuma et al. (2009)
SGR_5973	-45	-	TGGCGGAAAC	EMSA	G. Akanuma et al. (2009)
SGR_6809	-55	+	AGGCTGGATA	EMSA	G. Akanuma et al. (2009)
SGR_2910	-63	+	TGTCCGAAAA	EMSA	A. Higo et al. (2012)
SGR_745	-97	+	TGGCCGGATT	EMSA	A. Higo et al. (2012)
SGR_2045	-245	+	TGGCCGGAAC	EMSA	A. Higo et al. (2012)
SGR_5104	-60	+	TGGCCGGAAA	EMSA	A. Higo et al. (2012)
SGR_3620	-166	+	TGGCCGAAAA	EMSA	A. Higo et al. (2012)
SGR_1869	-46	+	TGGCCCGAAT	EMSA	A. Higo et al. (2012)
SGR_5922	-67	+	CGGCTGGTTT	EMSA	A. Higo et al. (2012)
SGR_5931	-109	-	TGACCGAAAA	DNAse footprinting	A. Tomono et al. (2005)
SGR_5931	-83	+	TGGCCGTTGC	DNAse footprinting	A. Tomono et al. (2005)
SGR_5930	-70	-	CGGCTGATTC	DNAse footprinting	A. Tomono et al. (2005)
SGR_5930	-83	+	TGGCGCGATC	DNAse footprinting	A. Tomono et al. (2005)

Region	Location	Orientation	Score	Binding sequence	Method