General information
| Regulator | AfsQ1 |
|---|---|
| Gene identifier | SCO4907 - 2SCK8.33c |
| Family | OmpR |
| Regulation type | Activator |
| Function | Two-component system AfsQ1-Q2 |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 20 sites.
Position Frequency Matrix
PFM| T | 0 | 17 | 3 | 0 | 0 | 0 | 2 | 1 | 0 | 4 | 4 | 0 | 19 | 5 | 5 | 0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 19 | 1 | 1 | 0 | 0 | 11 | 12 | 0 | 9 | 3 | 13 | 18 | 0 | 0 | 0 | 1 |
| C | 1 | 0 | 16 | 0 | 20 | 1 | 0 | 10 | 7 | 11 | 2 | 1 | 1 | 13 | 1 | 19 |
| A | 0 | 2 | 0 | 20 | 0 | 8 | 6 | 9 | 4 | 2 | 1 | 1 | 0 | 2 | 14 | 0 |
Position Weight Matrix
PWM| T | -1.32 | 1.93 | 0.00 | -1.32 | -1.32 | -1.32 | -0.32 | -0.74 | -1.32 | 0.26 | 0.26 | -1.32 | 2.07 | 0.49 | 0.49 | -1.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 2.07 | -0.74 | -0.74 | -1.32 | -1.32 | 1.38 | 1.49 | -1.32 | 1.14 | 0.00 | 1.58 | 2.00 | -1.32 | -1.32 | -1.32 | -0.74 |
| C | -0.74 | -1.32 | 1.85 | -1.32 | 2.14 | -0.74 | -1.32 | 1.26 | 0.85 | 1.38 | -0.32 | -0.74 | -0.74 | 1.58 | -0.74 | 2.07 |
| A | -1.32 | -0.32 | -1.32 | 2.14 | -1.32 | 1.00 | 0.68 | 1.14 | 0.26 | -0.32 | -0.74 | -0.74 | -1.32 | -0.32 | 1.68 | -1.32 |
Hidden Markov Model (HMM)
| Consensus | GTCACGGC-3-GTCAC |
|---|---|
| Alignment length | 16 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
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| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| SCO0674 | -168 | + | GTCACCGCCGGGTCAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO0812 | -124 | + | GTCACGACCGAGTCAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO1619 | -82 | + | GTCACATCGATGTCAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO1839 | -86 | + | GAGACAAGGTTGTGAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO1947 | 5 | + | GTCACGAACCGATCTC | DNAse footprinting | R. Wang et al. (2012) |
| SCO2527 | -84 | + | GAGACCTTTCCGTGAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO2528 | -326 | + | GTGACAGTGCGGTCAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO2978 | -111 | + | GTCACGACGCGGTCAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO3217 | -9 | + | CTGACCCGGCCGTAAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO3999 | -19 | + | GTGACAGGGCTGTGAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO4142 | -156 | + | GTCACGGAACGCTTAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO4184 | -51 | + | GTCACATAGCGGCCAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO4561 | -249 | + | GTCACGGAACGGTTAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO4596 | -230 | + | GTCACGGCGCGGTTCC | DNAse footprinting | R. Wang et al. (2012) |
| SCO4768 | -146 | + | CACACAGCCCCGTAAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO4768 | -45 | + | GTGACGATTTCGTACC | DNAse footprinting | R. Wang et al. (2012) |
| SCO4777 | -73 | + | GTCACAGAGCGGTTTC | DNAse footprinting | R. Wang et al. (2012) |
| SCO4908 | -221 | + | GTGACAGCTCTGTGAC | DNAse footprinting | R. Wang et al. (2012) |
| SCO5881 | -177 | + | GATACGAAGTGGTTTC | DNAse footprinting | R. Wang et al. (2012) |
| SCO6275 | -131 | + | GTCACGGCGTGGTAAC | DNAse footprinting | R. Wang et al. (2012) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|