LogoMotif

General information

Regulator	AfsR
Gene identifier	SCO4426 - SCD6.04c
Family	AfsR
Regulation type	Activator/repressor
Function	Pleiotropic regulatory for antibiotic production
Organism	Streptomyces coelicolor

External links

Sequence logo

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Based on 6 sites.

PFM
PWM

Position Frequency Matrix

PFM


T	0	4	0	0	0	4	0	0	0	0	0	0
G	4	2	0	0	2	0	6	0	0	0	6	0
C	0	0	0	2	0	2	0	0	0	6	0	6
A	2	0	6	4	4	0	0	6	6	0	0	0

Position Weight Matrix

PWM


T	-1.32	1.62	-1.32	-1.32	-1.32	1.62	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32
G	1.62	0.79	-1.32	-1.32	0.79	-1.32	2.14	-1.32	-1.32	-1.32	2.14	-1.32
C	-1.32	-1.32	-1.32	0.79	-1.32	0.79	-1.32	-1.32	-1.32	2.14	-1.32	2.14
A	0.79	-1.32	2.14	1.62	1.62	-1.32	-1.32	2.14	2.14	-1.32	-1.32	-1.32

Predictions

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Score:

Animate
Node Repulsion
Ideal Edge Length

Curated binding sequences
Predicted binding sequences

Gene ID	Location	Orientation	Binding sequence	Method	Reference
SCO4425	-40	+	GCGTTCAGCGTTCGTTTATCTCCCCCT	DNAse footprinting	P. Lee et al. (2002)
SCO4425	-42	-	GAGATAAACGAACGCTGAACGCT	DNAse footprinting	P. Lee et al. (2002)
SCO4142	-127	+	GGCGTTCATTTACGCCCTTC	DNAse footprinting	F. Santos-Beneit et al. (2009)
SCO4142	-127	-	GAAGGGCGTAAATGAACGCC	DNAse footprinting	F. Santos-Beneit et al. (2009)
SCO4229	1	+	GCCGCGTTCACGTCCAT	DNAse footprinting	F. Santos-Beneit et al. (2009)
SCO4229	1	-	CGCCGCGTTCACGTCCAT	DNAse footprinting	F. Santos-Beneit et al. (2009)

Region	Location	Orientation	Score	Binding sequence	Method