General information
| Regulator | ArgR |
|---|---|
| Gene identifier | SCO1576 - SCL24.12c |
| Family | ArgR |
| Regulation type | Repressor |
| Function | Regulator of arginine biosynthesis genes |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 29 sites.
Position Frequency Matrix
PFM| T | 5 | 12 | 8 | 17 | 0 | 8 | 1 | 21 | 0 | 0 | 8 | 10 | 6 | 25 | 7 | 0 | 0 | 13 | 2 | 2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 7 | 3 | 2 | 0 | 23 | 4 | 4 | 0 | 20 | 10 | 4 | 1 | 5 | 1 | 19 | 0 | 8 | 9 | 9 | 3 |
| C | 17 | 4 | 14 | 9 | 6 | 15 | 0 | 1 | 1 | 4 | 11 | 17 | 0 | 2 | 2 | 28 | 2 | 2 | 11 | 12 |
| A | 0 | 10 | 5 | 3 | 0 | 2 | 24 | 7 | 8 | 15 | 6 | 1 | 18 | 1 | 1 | 1 | 19 | 5 | 7 | 12 |
Position Weight Matrix
PWM| T | 0.12 | 1.04 | 0.59 | 1.46 | -1.32 | 0.59 | -0.89 | 1.72 | -1.32 | -1.32 | 0.59 | 0.83 | 0.30 | 1.94 | 0.45 | -1.32 | -1.32 | 1.13 | -0.57 | -0.57 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 0.45 | -0.30 | -0.57 | -1.32 | 1.84 | -0.07 | -0.07 | -1.32 | 1.66 | 0.83 | -0.07 | -0.89 | 0.12 | -0.89 | 1.59 | -1.32 | 0.59 | 0.71 | 0.71 | -0.30 |
| C | 1.46 | -0.07 | 1.22 | 0.71 | 0.30 | 1.30 | -1.32 | -0.89 | -0.89 | -0.07 | 0.94 | 1.46 | -1.32 | -0.57 | -0.57 | 2.09 | -0.57 | -0.57 | 0.94 | 1.04 |
| A | -1.32 | 0.83 | 0.12 | -0.30 | -1.32 | -0.57 | 1.89 | 0.45 | 0.59 | 1.30 | 0.30 | -0.89 | 1.53 | -0.89 | -0.89 | -0.89 | 1.59 | 0.12 | 0.45 | 1.04 |
Hidden Markov Model (HMM)
| Consensus | TG-ATG-2-CAT-CA |
|---|---|
| Alignment length | 20 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
Loading...
| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| -24 | + | GAACGCATACCTATGCAGTG | DNAse footprinting | R. Pérez-Redondo et al. (2012) | |
| -158 | + | CCACGCATGACCACTCAACA | DNAse footprinting | R. Pérez-Redondo et al. (2012) | |
| -22 | + | CAATGCATGATCATGCCACA | DNAse footprinting | R. Pérez-Redondo et al. (2012) | |
| -139 | + | GGAACCAAGCCCATGCAGTA | DNAse footprinting | R. Pérez-Redondo et al. (2012) | |
| -34 | + | TAACGGATAGCTTTTCATAA | DNAse footprinting | R. Pérez-Redondo et al. (2012) | |
| 8 | + | GCCTCCATGGCTGTGCAGAC | DNAse footprinting | R. Pérez-Redondo et al. (2012) | |
| -234 | + | CCATGCCAGGTCATTCGGAG | DNAse footprinting | R. Pérez-Redondo et al. (2012) | |
| -4 | + | CAGTCAATGACTTTTCAGGT | DNAse footprinting | A. Botas et al. (2018) | |
| -8 | + | CTCCGTAAGGCGATTCATGC | DNAse footprinting | A. Botas et al. (2018) | |
| 14 | + | TGTTGCTTGTCCATACGAAA | DNAse footprinting | A. Botas et al. (2018) | |
| -62 | + | CGCTGCGTAACCTCACAGTG | DNAse footprinting | A. Botas et al. (2018) | |
| -29 | + | TCATGCATGAGTATGCAGAA | DNAse footprinting | A. Botas et al. (2018) | |
| -17 | + | CGATGCACGTTTATGCAATG | DNAse footprinting | A. Botas et al. (2018) | |
| -37 | + | GAGAGCATGACTATACGTGC | DNAse footprinting | A. Botas et al. (2018) | |
| -62 | + | GTTCGGACGGTCACGCAGTG | DNAse footprinting | A. Botas et al. (2018) | |
| -41 | + | GCATGAACGGTTGTACGAAG | DNAse footprinting | A. Botas et al. (2018) | |
| -236 | + | TGCTGCAAAAATGTGCAAGA | DNAse footprinting | A. Botas et al. (2018) | |
| -124 | + | CTCTGCAAGCTCTTGCCGCC | DNAse footprinting | A. Botas et al. (2018) | |
| -143 | + | GTCCGTATCAGTATGCGGGA | DNAse footprinting | A. Botas et al. (2018) | |
| -38 | + | GGACGCATATGCACGCGTTG | DNAse footprinting | A. Botas et al. (2018) | |
| -68 | + | TTCTGCAAGATCATTAATGC | DNAse footprinting | A. Botas et al. (2018) | |
| -47 | + | CCTTGGATGACCTTGCGCCC | DNAse footprinting | A. Botas et al. (2018) | |
| 8 | + | GCCTCGTTGGTCATGCATCC | DNAse footprinting | A. Botas et al. (2018) | |
| -266 | + | CTCTCCGTGATCATGCACCC | DNAse footprinting | A. Botas et al. (2018) | |
| -34 | + | GTTCGTATAGACTTCCAGAA | DNAse footprinting | A. Botas et al. (2018) | |
| -54 | + | CGCTGTATAGAAATTCAGAA | DNAse footprinting | A. Botas et al. (2018) | |
| 3 | + | TGATGCATACTCTTCCTATG | DNAse footprinting | A. Botas et al. (2018) | |
| -17 | + | CTTTGCATGGTCATGCGTAA | DNAse footprinting | A. Botas et al. (2018) | |
| 14 | + | ATCCGCATGCTCATAGAAAC | DNAse footprinting | A. Botas et al. (2018) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|---|---|---|---|---|
| 162355:162375 | + | 21.95265168 | CTGCGCACGGTCATGCGTGA | pwm | |
| 236568:236588 | - | 22.13776088 | GGCCGCACACTCATGGAGAC | pwm | |
| 270470:270490 | + | 22.99355448 | TCCACCATGACCATGCAGCC | pwm | |
| 395058:395078 | + | 21.41245902 | TACTTCATGGACATGCACGA | pwm | |
| 826927:826947 | + | 22.03818929 | CGCCGGAAGGCCATGCGGAA | pwm | |
| 1146450:1146470 | - | 23.25196684 | GAACGCATACCTATGCAGTG | pwm | |
| 1217404:1217424 | + | 21.63668618 | GACCGGATGGTGATGCGTCC | pwm | |
| 1574474:1574494 | - | 22.13303922 | GCCCGCAAGGTCACGGAAAG | pwm | |
| 1591395:1591415 | + | 22.22785086 | CTCCGTAAGGCGATTCATGC | pwm | |
| 1681888:1681908 | + | 23.06611378 | TCATGCATGAGTATGCAGAA | pwm | |
| 1681888:1681908 | - | 24.79612932 | TCATGCATGAGTATGCAGAA | pwm | |
| 1761793:1761813 | + | 21.49272246 | CGCCGTACGGTCATGCGGCC | pwm | |
| 2134929:2134949 | + | 21.20883315 | CCCTGGATGCCCCTGCGTGA | pwm | |
| 2157811:2157831 | + | 21.53667031 | CCACGCATGACCACTCAACA | pwm | |
| 2202426:2202446 | - | 21.26090541 | TGATGCACGGCCTCGCAGAT | pwm | |
| 2400506:2400526 | + | 22.34283767 | CTCTGCAAGCTCTTGCCGCC | pwm | |
| 2826440:2826460 | + | 22.00948944 | TGCTGCATGACCGTTCACGA | pwm | |
| 2854799:2854819 | + | 20.97213853 | CCCCCCATGACTTCGCAGCC | pwm | |
| 2930861:2930881 | + | 24.32518791 | CAATGCATGATCATGCCACA | pwm | |
| 3262115:3262135 | + | 22.35856639 | CCCTCGATGGACATGCGGGC | pwm | |
| 3279691:3279711 | - | 22.00551355 | GCACGCATGAGCTTCGAGAG | pwm | |
| 3354071:3354091 | - | 21.43791256 | GCCTGCACGACCATGGAACA | pwm | |
| 3760558:3760578 | + | 21.76026191 | GATTCCAAGATCATTCAAGC | pwm | |
| 3832820:3832840 | - | 21.01111763 | GCTCGCCTGATCATTCAATG | pwm | |
| 3834031:3834051 | - | 21.05803753 | TCCCGCACGGTCAGACAGGG | pwm | |
| 3943071:3943091 | - | 22.68718354 | TCCGGCAAGATCATGCGGCG | pwm | |
| 3951654:3951674 | + | 21.65267883 | GTCCGGGTGACCGTGCGTCA | pwm | |
| 4205217:4205237 | + | 21.48065555 | CACAGCATGAGCACGCACAC | pwm | |
| 4330379:4330399 | + | 23.52641948 | CATCGCATGACCATGCGCCG | pwm | |
| 4339214:4339234 | + | 21.83943866 | TTCTGCAAGATCATTAATGC | pwm | |
| 4524655:4524675 | - | 21.05676375 | ACCTGCGTGATCATGCCGTG | pwm | |
| 4547117:4547137 | + | 21.42494905 | GTCTGCGTGATCATTCAGTG | pwm | |
| 4547117:4547137 | - | 23.30529897 | GTCTGCGTGATCATTCAGTG | pwm | |
| 4554135:4554155 | + | 22.09911019 | CGCTGGAAGACCATGCCGAC | pwm | |
| 4576181:4576201 | + | 22.09513199 | CCTTGGATGACCTTGCGCCC | pwm | |
| 4616012:4616032 | + | 22.04265995 | CACCGTATGAGCACGCACGA | pwm | |
| 4626387:4626407 | - | 21.60948917 | GAATGCATGCCCACCCAGTC | pwm | |
| 4708594:4708614 | + | 22.08196319 | GCCTCCATGGCTGTGCAGAC | pwm | |
| 4761220:4761240 | + | 22.36907228 | CTCTGCGTGGCCCTGCGTAA | pwm | |
| 4792463:4792483 | - | 21.26287789 | TCGCGCAAAATCATGCAAGC | pwm | |
| 5693651:5693671 | + | 22.18814078 | CCGAGCATGACCGTGCAGAC | pwm | |
| 6029054:6029074 | - | 20.97586301 | TGTTGAATGTTCAACCAGTC | pwm | |
| 6201776:6201796 | + | 21.10722057 | GTCCGCAAGTTCGTGCAGGA | pwm | |
| 6289894:6289914 | + | 21.0884783 | GACTCCAAGACCTTCCAGGA | pwm | |
| 6310068:6310088 | + | 20.96519061 | CTCAGCGTCACCATGCGGAC | pwm | |
| 6421331:6421351 | + | 23.59722141 | CTCTCCGTGATCATGCACCC | pwm | |
| 6731797:6731817 | - | 21.24936783 | GGATGTACGGCCATGCGCAC | pwm | |
| 6820332:6820352 | + | 21.29094823 | CCTTCCGTGGCCTTGCAGAC | pwm | |
| 6891161:6891181 | + | 21.0638269 | TCCTGCTTGGCCATGCCTGC | pwm | |
| 7488412:7488432 | + | 22.56112246 | CACCGCATGCCCACGCAGCG | pwm | |
| 7824733:7824753 | + | 26.19793646 | CTTTGCATGGTCATGCGTAA | pwm | |
| 7824733:7824753 | - | 23.14320248 | CTTTGCATGGTCATGCGTAA | pwm | |
| 7824753:7824773 | - | 22.27293059 | TGATGCATACTCTTCCTATG | pwm | |
| 8056145:8056165 | - | 21.26564157 | GGATTCATCGCCATGCGGAA | pwm | |
| 8260496:8260516 | + | 21.25735652 | CTCTGCCTGGTCCTGCGTCC | pwm | |
| 8360761:8360781 | - | 21.97453112 | GCCTGCACCGTCATGCCGAG | pwm | |
| 8402586:8402606 | - | 21.37339876 | TGCTGCAGGTCCATGGGGGG | pwm | |
| 8402788:8402808 | - | 23.01852927 | GGATGCATGCTCCTGCGGCG | pwm | |
| 8442589:8442609 | - | 21.52630823 | GTCCGCACGCTGATGCGGAG | pwm | |
| 8586448:8586468 | - | 22.36165813 | TGACGAACGTCCATCCGGAG | pwm | |
| 8617350:8617370 | + | 21.65774673 | CAGTGCGTGCCCATGCCTCA | pwm | |
| 250469:250489 | + | 23.68388099 | CCCTGCACGGCTATGCAGGC | pwm | |
| 250469:250489 | - | 22.10635163 | CCCTGCACGGCTATGCAGGC | pwm | |
| 32472:32492 | + | 21.39837552 | CACCGCGTGACCATGCTCGC | pwm | |
| 116302:116322 | + | 21.80161186 | GACTCTGAGACCATGCAGGC | pwm | |
| 116383:116403 | + | 22.65450412 | CATAGCTTGACTATGCATAA | pwm | |
| 323531:323551 | - | 21.39837552 | GCGAGCATGGTCACGCGGTG | pwm | |
| 750812:750832 | - | 22.06814998 | TCTTGCATTTCCATGCGAAC | pwm | |
| 1094504:1094524 | - | 21.14639294 | GTACGCATACTCATGCGCCC | pwm | |
| 1182301:1182321 | - | 21.21158725 | GTCTGCACGGGTATGGAAAC | pwm | |
| 1332480:1332500 | - | 21.82030747 | GGATCCATCACCATGCGGAG | pwm | |
| 1351295:1351315 | - | 21.20050962 | TGATCCATGTCCACACGGAG | pwm | |
| 1465649:1465669 | + | 20.93782733 | GGGTGCATGACCATGCCGTC | pwm | |
| 1465649:1465669 | - | 22.63479276 | GGGTGCATGACCATGCCGTC | pwm | |
| 1708762:1708782 | - | 21.50384856 | TTCTGCAGGGTCATGCCGGG | pwm | |
| 1845462:1845482 | - | 23.20601044 | GGGTGAATGAGCATGCGAAG | pwm | |
| 1897116:1897136 | + | 21.95619602 | CAGCGCGTGGCCATGCAGCT | pwm | |
| 2056871:2056891 | + | 21.53375884 | TTCCGCATGACCGTACGGGC | pwm | |
| 2256798:2256818 | - | 21.73275143 | TGCCGGACGATCATGCGGCG | pwm | |
| 2574946:2574966 | + | 22.81057368 | CACGGCATGGCCTTGCGGGC | pwm | |
| 2759129:2759149 | - | 21.48281687 | CGTTGCCTATCCATGCGGAG | pwm | |
| 2868478:2868498 | + | 22.17283705 | CCCCGCACGACCACGCATCC | pwm | |
| 4287106:4287126 | + | 21.48900581 | GTATGCATTCTTATGCATGA | pwm | |
| 4287116:4287136 | + | 25.36036252 | TTATGCATGATCATGCAACA | pwm | |
| 4287116:4287136 | - | 25.00775838 | TTATGCATGATCATGCAACA | pwm | |
| 4413183:4413203 | - | 21.55113419 | GGCGGCACGACCATACGGCG | pwm | |
| 5042508:5042528 | - | 21.65881307 | GTCTGAATAAGCATGCTGAA | pwm | |
| 5173669:5173689 | - | 21.64874161 | TGAAGCACGGTCATGGAAAC | pwm | |
| 5201737:5201757 | - | 22.10589121 | TGTGGCAAGGCCACGCAGTG | pwm | |
| 5424868:5424888 | - | 21.82245952 | GAATGCACGACCTTCCGGTG | pwm | |
| 5551876:5551896 | + | 22.46602286 | CTCCCCATGTTCATGCGGCC | pwm | |
| 5574709:5574729 | - | 21.31046241 | TCACGCACGCTTTTGCGGGG | pwm | |
| 5809737:5809757 | - | 22.3344226 | GTATGCCTGGCCTTGCAAGG | pwm | |
| 6012107:6012127 | + | 22.57943948 | CACACCATGACCATCCAGAA | pwm | |
| 6126846:6126866 | - | 21.15912671 | TGACGAACAGCCACGCGAAG | pwm | |
| 6299815:6299835 | + | 22.02809819 | GTCCGCATAAACATCCAAAC | pwm | |
| 6538483:6538503 | + | 21.05588999 | GTGCGCATGATCAATCATGC | pwm | |
| 6558274:6558294 | - | 21.16717383 | GGCTGGACGGTCAAGCAGTC | pwm | |
| 6641195:6641215 | + | 21.75727562 | CACCCCATGACCGTACAACC | pwm | |
| 6774503:6774523 | + | 22.1326116 | GTCCGGATGGGCGTGCGTCA | pwm | |
| 6819602:6819622 | - | 21.22816464 | TGACCCATGACCACACAGAG | pwm | |
| 6859018:6859038 | - | 21.49272246 | GGCCGCATGACCGTACGGCG | pwm | |
| 7365371:7365391 | - | 21.47237975 | TTCGGCGTGTTCATACGGAG | pwm | |
| 7519948:7519968 | - | 21.32458389 | GCAGGCACGGCCGTGCGGTG | pwm | |
| 7786356:7786376 | + | 21.09197524 | TCGCGCATAACCATGCGACC | pwm | |
| 7786356:7786376 | - | 21.0542268 | TCGCGCATAACCATGCGACC | pwm | |
| 7834850:7834870 | + | 21.99341414 | GCGAGCATGACCATGCAAAA | pwm | |
| 7834850:7834870 | - | 21.52217729 | GCGAGCATGACCATGCAAAA | pwm | |
| 7945459:7945479 | - | 21.02063109 | TGCTGCATGGTCAGCCACCG | pwm | |
| 8077641:8077661 | - | 23.11167566 | TTCTGAACATCCATGCAATG | pwm | |
| 245107:245127 | - | 21.09352053 | GGGCGGAAGCTCATGCGGTG | pwm | |
| 884529:884549 | + | 21.3165663 | CATTCGATGGTCATGCGGGT | pwm | |
| 1039376:1039396 | - | 22.21816774 | TGACGCCTGATCATGCGCTG | pwm | |
| 1318209:1318229 | - | 22.02372414 | GTAGGCATAACTATGCGGTC | pwm | |
| 1324280:1324300 | + | 26.27764067 | CTTTGCATGACCATGCGAGA | pwm | |
| 1324280:1324300 | - | 21.67361673 | CTTTGCATGACCATGCGAGA | pwm | |
| 1324300:1324320 | - | 22.27293059 | TGATGCATACTCTTCCTATG | pwm | |
| 1357570:1357590 | + | 21.58940654 | CACCGCAAAGGTATGCCTCC | pwm | |
| 1381458:1381478 | + | 22.61009222 | CGCCGTAAAACCGTGCATCA | pwm | |
| 1392900:1392920 | + | 21.49272246 | CGCCGTACGGTCATGCGGCC | pwm | |
| 1725604:1725624 | + | 21.4001315 | TTCTGCACGACCTTTCGGCC | pwm | |
| 1929642:1929662 | + | 21.71081278 | CCCCGTATGGCCATTCGGGT | pwm | |
| 2020649:2020669 | - | 22.02809819 | GTTTGGATGTTTATGCGGAC | pwm | |
| 2020649:2020669 | - | 22.02809819 | GTTTGGATGTTTATGCGGAC | pwm | |
| 2111993:2112013 | + | 22.22482623 | TCCTGCAAGACCTTGCAGGG | pwm | |
| 2111993:2112013 | - | 24.07085031 | TCCTGCAAGACCTTGCAGGG | pwm | |
| 2283703:2283723 | - | 21.33036099 | TTCGGCAAGGTCATGCGGAT | pwm | |
| 2390633:2390653 | + | 23.1603196 | CACCGGATGGACGTTCATCA | pwm | |
| 2682894:2682914 | - | 21.26650846 | TTCGGCATCGTCATACGGAC | pwm | |
| 2888151:2888171 | + | 20.930892 | ATCGGCATGATCGTGCAGAA | pwm | |
| 3290224:3290244 | + | 22.51802738 | CCCTCCGTGCCCATGCAGGC | pwm | |
| 3363896:3363916 | - | 21.04935432 | TCCTGCGGGATCATGCGGAC | pwm | |
| 3679941:3679961 | - | 22.32765524 | GTCTGCACGGTCACGGAGAC | pwm | |
| 3769642:3769662 | - | 21.05341202 | TCCTGGACGATCATGCTCAG | pwm | |
| 3821260:3821280 | - | 21.02913273 | AGACGAATCGTCTTGCGGAG | pwm | |
| 3895673:3895693 | + | 21.34428951 | CCCCGTGTGGCCATCCAGGC | pwm | |
| 3976576:3976596 | + | 21.68442117 | GAGCGCAAGGTCGTGCATGA | pwm | |
| 4304130:4304150 | - | 21.12213305 | GCCCGCATAACCTTGGAGGC | pwm | |
| 4444879:4444899 | + | 21.0048209 | CACTGCATGACGGTGCCGCT | pwm | |
| 4764369:4764389 | - | 21.14282795 | ACCTGCACGGTCTTGCGGCC | pwm | |
| 4859342:4859362 | + | 21.47928761 | CTGTGCATGTCGATGCAGAA | pwm | |
| 4918702:4918722 | + | 22.03045 | GCCTGGATGGCCTTGCAGTC | pwm | |
| 4918702:4918722 | - | 23.38859034 | GCCTGGATGGCCTTGCAGTC | pwm | |
| 5652790:5652810 | - | 21.43276174 | GGACGGATGGGCATGCGTCG | pwm | |
| 6025777:6025797 | - | 22.03489645 | GGACGTATGGTCATGCCATG | pwm | |
| 6048038:6048058 | - | 22.07897344 | GCCCGAATGCCCATACGGCG | pwm | |
| 6409966:6409986 | + | 20.94679134 | CCCCGCATGGACGTGGAGCA | pwm | |
| 6473480:6473500 | - | 21.3664037 | GGTCGAACACCCATGCAGGG | pwm | |
| 6558997:6559017 | + | 21.10849521 | CATCGCAGGAACGTTCATGA | pwm | |
| 6572863:6572883 | + | 21.1913267 | CAGCGCATGACCAGGCCTGA | pwm | |
| 6633528:6633548 | + | 21.9681416 | GACCGCAAGGCCAAGCAGGA | pwm | |
| 6978064:6978084 | + | 21.4634764 | CCCAGCATGATCGTGCCGAA | pwm | |
| 7048353:7048373 | - | 21.40674562 | TCCTTCATGGTCATGCCGCG | pwm | |
| 7449133:7449153 | + | 21.3874644 | CATTGCCTGATGATGCGTCA | pwm | |
| 7499810:7499830 | + | 22.71250405 | GTCGGCAAGGCCATGCAGAA | pwm | |
| 7499810:7499830 | - | 23.04537908 | GTCGGCAAGGCCATGCAGAA | pwm | |
| 7801906:7801926 | - | 22.38790816 | GTCGGCAAGATCTTGCAATG | pwm |