LogoMotif

General information

Regulator	BldD
Gene identifier	SCO1489 - SC9C5.13
Family	XRE
Regulation type	Repressor
Function	Development and antibiotic global regulator
Organism	Streptomyces coelicolor

External links

Sequence logo

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Based on 19 sites.

Position Frequency Matrix

PFM


T	13	5	0	0	6	3	4	2	0	0	18	6	0	5
G	3	1	3	0	11	4	0	16	4	19	1	10	4	0
C	1	12	1	19	0	9	0	0	8	0	0	3	1	12
A	2	1	15	0	2	3	15	1	7	0	0	0	14	2

Position Weight Matrix

PWM


T	1.65	0.54	-1.32	-1.32	0.73	0.04	0.31	-0.28	-1.32	-1.32	2.07	0.73	-1.32	0.54
G	0.04	-0.71	0.04	-1.32	1.44	0.31	-1.32	1.91	0.31	2.14	-0.71	1.32	0.31	-1.32
C	-0.71	1.55	-0.71	2.14	-1.32	1.20	-1.32	-1.32	1.06	-1.32	-1.32	0.04	-0.71	1.55
A	-0.28	-0.71	1.83	-1.32	-0.28	0.04	1.83	-0.71	0.91	-1.32	-1.32	-1.32	1.74	-0.28

Hidden Markov Model (HMM)


Consensus	G-2-ACTCT-2-GTGA
Alignment length	15

Predictions

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Score:

Animate
Node Repulsion
Ideal Edge Length

Curated binding sequences
Predicted binding sequences

Gene ID	Location	Orientation	Binding sequence	Method	Reference
SCO0762	-119	-	AATACGCAAGGTTAC	ChIP-chip	C. Den Hengst et al. (2010)
SCO1415	-26	+	AGTACTCATGGTGAC	ChIP-chip	C. Den Hengst et al. (2010)
SCO1489	-71	+	GTAACGCTGCGTAAC	ChIP-chip	C. Den Hengst et al. (2010)
SCO1489	-56	-	GTAACTCACTGTGAG	ChIP-chip	C. Den Hengst et al. (2010)
SCO1541	-17	+	AACACTCAGAGGGGT	ChIP-chip	C. Den Hengst et al. (2010)
SCO1630	-269	+	ATGACTCACCGTGAC	ChIP-chip	C. Den Hengst et al. (2010)
SCO2082	-226	-	ATCACATAGGGTGAA	ChIP-chip	C. Den Hengst et al. (2010)
SCO2792	-194	+	GCAACGCTTCGTGAT	ChIP-chip	C. Den Hengst et al. (2010)
SCO3034	-129	+	TTCACTCTGCGGAAC	ChIP-chip	C. Den Hengst et al. (2010)
SCO3087	5	-	GTCACGCTGCGTGAC	ChIP-chip	C. Den Hengst et al. (2010)
SCO3323	-353	-	ATAACGCTTCGTGCA	ChIP-chip	C. Den Hengst et al. (2010)
SCO3540	-9	+	GTAACTCTCCGCGAC	ChIP-chip	C. Den Hengst et al. (2010)
SCO4091	-241	+	GTGACTGATCGTCAC	ChIP-chip	C. Den Hengst et al. (2010)
SCO4678	-97	+	GTCACTCAGCGTGGC	ChIP-chip	C. Den Hengst et al. (2010)
SCO4768	-170	-	GGCACTCTACGTGAG	ChIP-chip	C. Den Hengst et al. (2010)
SCO5244	-128	+	GTCACTCATAGTAAA	ChIP-chip	C. Den Hengst et al. (2010)
SCO5621	-197	-	ATCGCTCTGGGTGAT	ChIP-chip	C. Den Hengst et al. (2010)
SCO5621	-101	+	GTCACGCTACGCTCA	ChIP-chip	C. Den Hengst et al. (2010)
SCO6733	-95	-	ACGACGCTGCGTGGG	ChIP-chip	C. Den Hengst et al. (2010)

Region	Location	Orientation	Score	Binding sequence	Method