General information
| Regulator | CatR |
|---|---|
| Gene identifier | SCO5206 - SC7E4.03c |
| Family | Fur |
| Regulation type | Repressor |
| Function | H2O2-responsive repressor |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 4 sites.
Position Frequency Matrix
PFM| T | 4 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 4 | 0 | 3 | 0 | 0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 0 | 3 | 4 | 0 | 0 | 0 | 3 | 1 | 2 | 0 | 0 | 0 | 0 | 0 |
| C | 0 | 0 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 0 | 4 | 1 | 0 | 0 |
| A | 0 | 1 | 0 | 4 | 1 | 2 | 0 | 2 | 2 | 0 | 0 | 0 | 4 | 4 |
Position Weight Matrix
PWM| T | 2.14 | -1.32 | -1.32 | -1.32 | 0.49 | -1.32 | 0.49 | 0.49 | -1.32 | 2.14 | -1.32 | 1.77 | -1.32 | -1.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | -1.32 | 1.77 | 2.14 | -1.32 | -1.32 | -1.32 | 1.77 | 0.49 | 1.26 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 |
| C | -1.32 | -1.32 | -1.32 | -1.32 | 1.26 | 1.26 | -1.32 | -1.32 | -1.32 | -1.32 | 2.14 | 0.49 | -1.32 | -1.32 |
| A | -1.32 | 0.49 | -1.32 | 2.14 | 0.49 | 1.26 | -1.32 | 1.26 | 1.26 | -1.32 | -1.32 | -1.32 | 2.14 | 2.14 |
Hidden Markov Model (HMM)
| Consensus | TGGA-CG-GTCTAA |
|---|---|
| Alignment length | 15 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
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| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| SCO5206 | -66 | - | ATGGACAGTGTCTAA | ChIP-PCR | Y. Kim et al. (2021) |
| SCO0379 | -42 | - | TTGGACAGGATCTAA | ChIP-PCR | Y. Kim et al. (2021) |
| SCO2027 | -23 | - | GTGGAACGAGTCCAA | ChIP-PCR | Y. Kim et al. (2021) |
| SCO4983 | -37 | + | TTAGATCTAATCTAA | ChIP-PCR | Y. Kim et al. (2021) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|