LogoMotif

General information

Regulator	CelR
Gene identifier	SCO1376 - SC10A9.18
Family	LacI
Regulation type	Repressor
Function	Cellobiose uptake repressor
Organism	Streptomyces coelicolor

External links

Sequence logo

Logo

Based on 14 sites.

PFM
PWM

Position Frequency Matrix

PFM


T	13	0	0	0	0	0	0	0	0	14	3	3	0	0	8
G	0	14	11	14	0	14	0	14	2	0	0	0	0	0	3
C	1	0	0	0	0	0	14	0	12	0	11	11	14	0	2
A	0	0	3	0	14	0	0	0	0	0	0	0	0	14	1

Position Weight Matrix

PWM


T	2.04	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	2.14	0.33	0.33	-1.32	-1.32	1.43
G	-1.32	2.14	1.82	2.14	-1.32	2.14	-1.32	2.14	-0.04	-1.32	-1.32	-1.32	-1.32	-1.32	0.33
C	-0.54	-1.32	-1.32	-1.32	-1.32	-1.32	2.14	-1.32	1.94	-1.32	1.82	1.82	2.14	-1.32	-0.04
A	-1.32	-1.32	0.33	-1.32	2.14	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	2.14	-0.54

Predictions

Scroll zoom

Score:

Animate
Node Repulsion
Ideal Edge Length

Curated binding sequences
Predicted binding sequences

Gene ID	Location	Orientation	Binding sequence	Method	Reference
SCO0643	-54	-	CCTTGGGAGCGCTCCCATGC	DNAse footprinting	P. Tocquin et al. (2016)
SCO0716	-33	+	GCGTGAGAGCGCTCTCAGGC	DNAse footprinting	P. Tocquin et al. (2016)
SCO0765	-34	-	ATTTGGGAGCGCTCCCATTC	DNAse footprinting	P. Tocquin et al. (2016)
SCO1187	-67	+	AAGTGGGAGCGCTCCCATCA	DNAse footprinting	P. Tocquin et al. (2016)
SCO1187	-41	+	AGTTGGGAGCGCTCCCGCAC	DNAse footprinting	P. Tocquin et al. (2016)
SCO2794	-218	-	GTGTGGGAGCGCTCCCACAA	DNAse footprinting	P. Tocquin et al. (2016)
SCO2795	-127	+	TTGTGGGAGCGCTCCCACAC	DNAse footprinting	P. Tocquin et al. (2016)
SCO2798	4	+	CTATGGGAGCGCTTCCATGC	DNAse footprinting	P. Tocquin et al. (2016)
SCO6546	-59	-	CTATGGGAGCGCTCCCACTG	DNAse footprinting	P. Tocquin et al. (2016)
SCO6546	-201	-	TGATGGAACCGCTCCCACTG	DNAse footprinting	P. Tocquin et al. (2016)
SCO6548	-298	+	CAGTGGGAGCGGTTCCATCA	DNAse footprinting	P. Tocquin et al. (2016)
SCO6665	-65	-	CTCTGAGAGCGCTCTCAGAA	DNAse footprinting	P. Tocquin et al. (2016)
SCO7559	-42	-	CGCTGAGAGCGCTCTCAGAA	DNAse footprinting	P. Tocquin et al. (2016)
SCO7637	29	-	CTTTGGGAGCGCTCCCATCG	DNAse footprinting	P. Tocquin et al. (2016)

Region	Location	Orientation	Score	Binding sequence	Method