General information
| Regulator | CelR |
|---|---|
| Gene identifier | SCO1376 - SC10A9.18 |
| Family | LacI |
| Regulation type | Repressor |
| Function | Cellobiose uptake repressor |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 14 sites.
Position Frequency Matrix
PFM| T | 13 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14 | 3 | 3 | 0 | 0 | 8 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 0 | 14 | 11 | 14 | 0 | 14 | 0 | 14 | 2 | 0 | 0 | 0 | 0 | 0 | 3 |
| C | 1 | 0 | 0 | 0 | 0 | 0 | 14 | 0 | 12 | 0 | 11 | 11 | 14 | 0 | 2 |
| A | 0 | 0 | 3 | 0 | 14 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14 | 1 |
Position Weight Matrix
PWM| T | 2.04 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | 2.14 | 0.33 | 0.33 | -1.32 | -1.32 | 1.43 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | -1.32 | 2.14 | 1.82 | 2.14 | -1.32 | 2.14 | -1.32 | 2.14 | -0.04 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | 0.33 |
| C | -0.54 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | 2.14 | -1.32 | 1.94 | -1.32 | 1.82 | 1.82 | 2.14 | -1.32 | -0.04 |
| A | -1.32 | -1.32 | 0.33 | -1.32 | 2.14 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | 2.14 | -0.54 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
Loading...
| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| -54 | - | CCTTGGGAGCGCTCCCATGC | DNAse footprinting | P. Tocquin et al. (2016) | |
| -33 | + | GCGTGAGAGCGCTCTCAGGC | DNAse footprinting | P. Tocquin et al. (2016) | |
| -34 | - | ATTTGGGAGCGCTCCCATTC | DNAse footprinting | P. Tocquin et al. (2016) | |
| -67 | + | AAGTGGGAGCGCTCCCATCA | DNAse footprinting | P. Tocquin et al. (2016) | |
| -41 | + | AGTTGGGAGCGCTCCCGCAC | DNAse footprinting | P. Tocquin et al. (2016) | |
| -218 | - | GTGTGGGAGCGCTCCCACAA | DNAse footprinting | P. Tocquin et al. (2016) | |
| -127 | + | TTGTGGGAGCGCTCCCACAC | DNAse footprinting | P. Tocquin et al. (2016) | |
| 4 | + | CTATGGGAGCGCTTCCATGC | DNAse footprinting | P. Tocquin et al. (2016) | |
| -59 | - | CTATGGGAGCGCTCCCACTG | DNAse footprinting | P. Tocquin et al. (2016) | |
| -201 | - | TGATGGAACCGCTCCCACTG | DNAse footprinting | P. Tocquin et al. (2016) | |
| -298 | + | CAGTGGGAGCGGTTCCATCA | DNAse footprinting | P. Tocquin et al. (2016) | |
| -65 | - | CTCTGAGAGCGCTCTCAGAA | DNAse footprinting | P. Tocquin et al. (2016) | |
| -42 | - | CGCTGAGAGCGCTCTCAGAA | DNAse footprinting | P. Tocquin et al. (2016) | |
| 29 | - | CTTTGGGAGCGCTCCCATCG | DNAse footprinting | P. Tocquin et al. (2016) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|---|---|---|---|---|
| 595391:595406 | - | 28.64789958 | GTGGGAGCGCTCCCA | pwm | |
| 595392:595407 | + | 28.64789958 | TGGGAGCGCTCCCAC | pwm | |
| 633045:633060 | - | 22.08704569 | CTGAGACCGCCCCCA | pwm | |
| 685151:685166 | - | 30.11502559 | ATGGGAGCGCTCCCA | pwm | |
| 685152:685167 | + | 28.14539924 | TGGGAGCGCTCCCAA | pwm | |
| 759145:759160 | - | 25.65837019 | GTGAGAGCGCTCTCA | pwm | |
| 759146:759161 | + | 26.03033897 | TGAGAGCGCTCTCAG | pwm | |
| 812451:812466 | - | 30.11502559 | ATGGGAGCGCTCCCA | pwm | |
| 812452:812467 | + | 28.14539924 | TGGGAGCGCTCCCAA | pwm | |
| 1259255:1259270 | - | 22.97547423 | CCGGGAGCGCTCCCG | pwm | |
| 1259256:1259271 | + | 22.97547423 | CGGGAGCGCTCCCGG | pwm | |
| 1259375:1259390 | - | 28.64789958 | GTGGGAGCGCTCCCA | pwm | |
| 1259376:1259391 | + | 30.11502559 | TGGGAGCGCTCCCAT | pwm | |
| 1259401:1259416 | - | 25.56043674 | TTGGGAGCGCTCCCG | pwm | |
| 1259402:1259417 | + | 25.18846796 | TGGGAGCGCTCCCGC | pwm | |
| 2520390:2520405 | - | 28.64789958 | GTGGGAGCGCTCCCA | pwm | |
| 2520391:2520406 | + | 28.64789958 | TGGGAGCGCTCCCAC | pwm | |
| 3051112:3051127 | - | 28.64789958 | GTGGGAGCGCTCCCA | pwm | |
| 3051113:3051128 | + | 28.64789958 | TGGGAGCGCTCCCAC | pwm | |
| 3054655:3054670 | - | 26.65559397 | ATGGGAGCGCTTCCA | pwm | |
| 3054656:3054671 | + | 28.6202609 | TGGGAGCGCTTCCAT | pwm | |
| 3101011:3101026 | - | 22.04162657 | GTGGGGGCGCTCACA | pwm | |
| 3101012:3101027 | + | 22.41359535 | TGGGGGCGCTCACAG | pwm | |
| 5659412:5659427 | + | 22.01398789 | TGGGAGCGCTTGCCT | pwm | |
| 5793379:5793394 | - | 22.10100512 | CTGGGCGCGCGCCCA | pwm | |
| 6324356:6324371 | - | 30.11502559 | ATGGGAGCGCTCCCA | pwm | |
| 6324357:6324372 | + | 30.11502559 | TGGGAGCGCTCCCAT | pwm | |
| 7243788:7243803 | - | 28.64789958 | GTGGGAGCGCTCCCA | pwm | |
| 7243789:7243804 | + | 30.11502559 | TGGGAGCGCTCCCAT | pwm | |
| 7243931:7243946 | + | 26.64163455 | TGGGAGCGGTTCCAT | pwm | |
| 7405298:7405313 | - | 26.03033897 | CTGAGAGCGCTCTCA | pwm | |
| 7405299:7405314 | + | 26.03033897 | TGAGAGCGCTCTCAG | pwm | |
| 8188897:8188912 | - | 28.64789958 | GTGGGAGCGCTCCCA | pwm | |
| 8188898:8188913 | + | 29.01986835 | TGGGAGCGCTCCCAG | pwm | |
| 8199304:8199319 | - | 25.15586985 | TTGAGAGCGCTCTCA | pwm | |
| 8199305:8199320 | + | 27.1254962 | TGAGAGCGCTCTCAT | pwm | |
| 8383472:8383487 | - | 26.03033897 | CTGAGAGCGCTCTCA | pwm | |
| 8383473:8383488 | + | 26.03033897 | TGAGAGCGCTCTCAG | pwm | |
| 8399436:8399451 | - | 23.20984161 | GTGGGCCCGCTCCCA | pwm | |
| 159175:159190 | - | 24.06567204 | CTGGAGGCGCTCCCA | pwm | |
| 202960:202975 | - | 28.64789958 | GTGGGAGCGCTCCCA | pwm | |
| 202961:202976 | + | 29.01986835 | TGGGAGCGCTCCCAG | pwm | |
| 227616:227631 | - | 27.53006309 | ATGGGAGCGCTCCCG | pwm | |
| 227617:227632 | + | 25.18846796 | TGGGAGCGCTCCCGC | pwm | |
| 894232:894247 | - | 25.15586985 | TTGAGAGCGCTCTCA | pwm | |
| 894233:894248 | + | 26.03033897 | TGAGAGCGCTCTCAG | pwm | |
| 1235420:1235435 | + | 22.19893857 | TGGGAGCGCTTTCCC | pwm | |
| 1593119:1593134 | - | 21.92973369 | GCGGGAACGCTCCCA | pwm | |
| 1593120:1593135 | + | 22.97547423 | CGGGAACGCTCCCAG | pwm | |
| 2301943:2301958 | - | 25.15586985 | TTGAGAGCGCTCTCA | pwm | |
| 2301944:2301959 | + | 26.03033897 | TGAGAGCGCTCTCAG | pwm | |
| 2327358:2327373 | - | 25.65729827 | CTGGGAGCGCTCCCC | pwm | |
| 2327359:2327374 | + | 26.65559397 | TGGGAGCGCTCCCCT | pwm | |
| 2883484:2883499 | - | 28.14539924 | TTGGGAGCGCTCCCA | pwm | |
| 2883485:2883500 | + | 28.64789958 | TGGGAGCGCTCCCAC | pwm | |
| 3726029:3726044 | - | 26.03033897 | CTGGAAGCGCTCTCA | pwm | |
| 3726030:3726045 | + | 24.06567204 | TGGAAGCGCTCTCAG | pwm | |
| 3730286:3730301 | + | 22.57090735 | CGAGAGCGCTCTCAA | pwm | |
| 3730449:3730464 | - | 25.15586985 | TTGAGAGCGCTCTCA | pwm | |
| 3730450:3730465 | + | 25.15586985 | TGAGAGCGCTCTCAA | pwm | |
| 3973038:3973053 | - | 22.60350546 | GCGGGAGCGCTCCCG | pwm | |
| 3973039:3973054 | + | 22.60350546 | CGGGAGCGCTCCCGC | pwm | |
| 5442506:5442521 | + | 25.16082928 | TGGGCGCGCTTCCAT | pwm | |
| 5564517:5564532 | - | 30.11502559 | ATGGGAGCGCTCCCA | pwm | |
| 5564518:5564533 | + | 28.64789958 | TGGGAGCGCTCCCAC | pwm | |
| 5568114:5568129 | - | 25.56043674 | CAGGGAGCGCTCCCA | pwm | |
| 5568115:5568130 | + | 25.2853295 | AGGGAGCGCTCCCAC | pwm | |
| 5569660:5569675 | - | 28.14539924 | TTGGGAGCGCTCCCA | pwm | |
| 5569661:5569676 | + | 28.14539924 | TGGGAGCGCTCCCAA | pwm | |
| 6681687:6681702 | + | 22.30170247 | TCGGAGCGATCCCAG | pwm | |
| 7081216:7081231 | - | 22.10100512 | CTGGGAGCGCACCGA | pwm | |
| 8314748:8314763 | - | 25.18846796 | GTGGGAGCGCTCCAA | pwm | |
| 8314749:8314764 | + | 25.18846796 | TGGGAGCGCTCCAAC | pwm | |
| 8314835:8314850 | - | 28.14539924 | TTGGGAGCGCTCCCA | pwm | |
| 8314836:8314851 | + | 28.64789958 | TGGGAGCGCTCCCAC | pwm | |
| 48409:48424 | + | 22.19893857 | TGAGAGCGCTTCCTC | pwm | |
| 77263:77278 | - | 22.60350546 | GCGGGAGCGCTCCCG | pwm | |
| 77264:77279 | + | 22.60350546 | CGGGAGCGCTCCCGC | pwm | |
| 398710:398725 | - | 22.91609569 | GTGGCAGCGCTCCCG | pwm | |
| 2813424:2813439 | - | 28.64789958 | GTGGGAGCGCTCCCA | pwm | |
| 2813425:2813440 | + | 28.64789958 | TGGGAGCGCTCCCAC | pwm | |
| 3121210:3121225 | - | 22.09200512 | ACGGGACCGCTCCCG | pwm | |
| 3655282:3655297 | - | 22.10100512 | CCGGGAGCGCGCCCA | pwm | |
| 3655283:3655298 | + | 22.10100512 | CGGGAGCGCGCCCAA | pwm | |
| 3968516:3968531 | - | 22.51045689 | CTGGGAGCGCTCGCC | pwm | |
| 3968517:3968532 | + | 22.04162657 | TGGGAGCGCTCGCCC | pwm | |
| 5067047:5067062 | - | 23.19616235 | AGGGGCGCGCTCCCA | pwm | |
| 5616631:5616646 | - | 25.16082928 | ATGAGAGCGCGCCCA | pwm | |
| 5616632:5616647 | + | 23.69370327 | TGAGAGCGCGCCCAC | pwm | |
| 5629447:5629462 | - | 22.08704569 | CTGGAACCGGTCCCA | pwm | |
| 7109848:7109863 | - | 25.15586985 | TTGAGAGCGCTCTCA | pwm | |
| 7109849:7109864 | + | 25.15586985 | TGAGAGCGCTCTCAA | pwm | |
| 7203103:7203118 | - | 28.6202609 | ATGAGAGCGCTCCCA | pwm | |
| 7203104:7203119 | + | 26.65063454 | TGAGAGCGCTCCCAA | pwm | |
| 7206631:7206646 | - | 30.11502559 | ATGGGAGCGCTCCCA | pwm | |
| 7206632:7206647 | + | 28.64789958 | TGGGAGCGCTCCCAC | pwm | |
| 7206807:7206822 | - | 28.64789958 | GTGGGAGCGCTCCCA | pwm | |
| 7206808:7206823 | + | 30.11502559 | TGGGAGCGCTCCCAT | pwm | |
| 7211563:7211578 | - | 28.64789958 | GTGGGAGCGCTCCCA | pwm | |
| 7211564:7211579 | + | 28.64789958 | TGGGAGCGCTCCCAC | pwm | |
| 7263748:7263763 | - | 23.19616235 | ATGGGAGCGCGGCCA | pwm | |
| 7263749:7263764 | + | 22.04162657 | TGGGAGCGCGGCCAC | pwm | |
| 7344902:7344917 | - | 27.15313488 | GTGGAAGCGCTCCCA | pwm | |
| 7344903:7344918 | + | 25.18846796 | TGGAAGCGCTCCCAC | pwm | |
| 7344917:7344932 | - | 24.06567204 | CGGGAAGCGCTCCCA | pwm | |
| 7344918:7344933 | + | 22.19786666 | GGGAAGCGCTCCCAG | pwm | |
| 7345050:7345065 | - | 24.06567204 | CTGGAAGCGCTGCCA | pwm | |
| 7345051:7345066 | + | 22.41359535 | TGGAAGCGCTGCCAG | pwm | |
| 7536136:7536151 | - | 22.10100512 | CTGGGCGCGGTCCCA | pwm | |
| 7536137:7536152 | + | 23.58181039 | TGGGCGCGGTCCCAG | pwm | |
| 7689377:7689392 | - | 26.03033897 | CTGAGAGCGCTCTCA | pwm | |
| 7689378:7689393 | + | 25.15586985 | TGAGAGCGCTCTCAA | pwm | |
| 7689531:7689546 | + | 22.19893857 | TGAGAGCGCTCTCTC | pwm | |
| 7693605:7693620 | - | 27.52510366 | CTGAGAGCGCTCCCA | pwm | |
| 7693606:7693621 | + | 27.52510366 | TGAGAGCGCTCCCAG | pwm | |
| 7802049:7802064 | - | 25.15586985 | TTGAGAGCGCTCTCA | pwm | |
| 7802050:7802065 | + | 26.03033897 | TGAGAGCGCTCTCAG | pwm | |
| 7973178:7973193 | - | 22.11084943 | ATGGCAGCGCTCTCC | pwm |