General information
| Regulator | Crp |
|---|---|
| Gene identifier | SCO3571 - SCH17.05 |
| Family | CRP |
| Regulation type | Activator |
| Function | Spore germination and colony development |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 15 sites.
Position Frequency Matrix
PFM| T | 0 | 12 | 0 | 2 | 0 | 1 | 0 | 2 | 1 | 0 | 7 | 0 | 2 | 1 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 13 | 0 | 9 | 4 | 3 | 5 | 7 | 5 | 3 | 3 | 2 | 0 | 3 | 2 |
| C | 0 | 1 | 3 | 3 | 5 | 6 | 0 | 4 | 4 | 7 | 3 | 12 | 1 | 9 |
| A | 0 | 0 | 1 | 4 | 5 | 1 | 6 | 2 | 5 | 3 | 1 | 1 | 7 | 1 |
Position Weight Matrix
PWM| T | -1.32 | 2.03 | -1.32 | 0.02 | -1.32 | -0.50 | -1.32 | 0.02 | -0.50 | -1.32 | 1.35 | -1.32 | 0.02 | -0.50 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 2.14 | -1.32 | 1.66 | 0.71 | 0.40 | 0.95 | 1.35 | 0.95 | 0.40 | 0.40 | 0.02 | -1.32 | 0.40 | 0.02 |
| C | -1.32 | -0.50 | 0.40 | 0.40 | 0.95 | 1.17 | -1.32 | 0.71 | 0.71 | 1.35 | 0.40 | 2.03 | -0.50 | 1.66 |
| A | -1.32 | -1.32 | -0.50 | 0.71 | 0.95 | -0.50 | 1.17 | 0.02 | 0.95 | 0.40 | -0.50 | -0.50 | 1.35 | -0.50 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
Loading...
| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| 3529980:3529993 | + | GCGGAGGCACTCAC | ChIP-chip | G. Chan et al. (2012) | |
| 3543004:3543017 | - | GTGACATCGCGTAC | ChIP-chip | G. Chan et al. (2012) | |
| 3543614:3543627 | + | GGGGTGCCGTACAC | ChIP-chip | G. Chan et al. (2012) | |
| 5528328:5528341 | + | GTGACGAGCGACGA | ChIP-chip | G. Chan et al. (2012) | |
| 5528118:5528131 | + | GTCCATGTAATCAC | ChIP-chip | G. Chan et al. (2012) | |
| 5680826:5680839 | + | GTTCGTCTGTGCAC | ChIP-chip | G. Chan et al. (2012) | |
| 5682902:5682915 | + | GTCGCGATACTCAC | ChIP-chip | G. Chan et al. (2012) | |
| 6898863:6898876 | - | GTGAGGAGAATCTT | ChIP-chip | G. Chan et al. (2012) | |
| 6899212:6899225 | + | GTGTCCGGCGGCGC | ChIP-chip | G. Chan et al. (2012) | |
| 6931952:6931965 | - | CCGAGCGTGGTCAC | ChIP-chip | G. Chan et al. (2012) | |
| 7104981:7104994 | + | GTGAAGGCGCCCTG | ChIP-chip | G. Chan et al. (2012) | |
| 4979987:4979999 | + | GTGAAAATGTCAC | ChIP-chip | G. Chan et al. (2012) | |
| 5357128:5357143 | - | GTGTGGGCAAGCTCAC | ChIP-chip | G. Chan et al. (2012) | |
| 5416236:5416249 | + | GTCGCAGCCCCCAC | ChIP-chip | G. Chan et al. (2012) | |
| 5720005:5720017 | + | GTGGCCCAGACAG | ChIP-chip | G. Chan et al. (2012) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|---|---|---|---|---|
| 672626:672640 | - | 17.99502567 | GCGAGCCTGGCCAC | pwm | |
| 740178:740192 | - | 18.87965575 | GTGAGGGCGTGCAC | pwm | |
| 908720:908734 | - | 18.26935161 | GTGACGCCCGTCAC | pwm | |
| 988504:988518 | + | 19.03291141 | GTGAAGACACTCAC | pwm | |
| 1046077:1046091 | - | 18.32864058 | GTGAGCGCGCCCAC | pwm | |
| 1393947:1393961 | - | 18.26935161 | GTGACGCCCTTCAC | pwm | |
| 1401033:1401047 | + | 18.26935161 | GTGACGGGCCCCAC | pwm | |
| 1623446:1623460 | + | 18.02203511 | GTCACGAGACTCAC | pwm | |
| 1873071:1873085 | + | 18.23294425 | GTGTCGGGGCTCAC | pwm | |
| 1877464:1877478 | - | 18.51871108 | GTGACTCCCGCCAC | pwm | |
| 1967194:1967208 | + | 18.0473219 | GTGGCCACCGTCAC | pwm | |
| 2298694:2298708 | - | 18.19612942 | GTGAGCACGGTCAC | pwm | |
| 2396965:2396979 | - | 19.43067092 | GTGAGGCCGGTCAC | pwm | |
| 2416007:2416021 | - | 18.49778512 | GTGAGGACGGCCAC | pwm | |
| 2420406:2420420 | - | 18.49778512 | GTGAGGACGGCCAC | pwm | |
| 2453615:2453629 | - | 18.19612942 | GTGAGGTCGTGCAC | pwm | |
| 2687965:2687979 | + | 18.3334962 | GTGGCGAGAATCAC | pwm | |
| 2857058:2857072 | - | 18.22631242 | GTGAGACCGGTCAC | pwm | |
| 3019709:3019723 | + | 18.17043515 | GTCACCGGCCTCAC | pwm | |
| 3101011:3101025 | + | 18.11609595 | GTGGGGGCGCTCAC | pwm | |
| 3161427:3161441 | + | 18.19612942 | GTGGGCGAACTCAC | pwm | |
| 3166642:3166656 | + | 18.26935161 | GTGGCGGGCGTCAC | pwm | |
| 3198443:3198457 | - | 18.66711112 | GTGAGCGCCGCCAC | pwm | |
| 3344250:3344264 | - | 17.99502567 | GTGATGCTGGGCAC | pwm | |
| 3368212:3368226 | - | 18.61481489 | GTGAGCCCCGGCAC | pwm | |
| 3642234:3642248 | - | 18.01999214 | GCGAGGGCCGTCAC | pwm | |
| 3673315:3673329 | + | 18.18024054 | GTGACCGGGGTCAC | pwm | |
| 3863874:3863888 | - | 18.10002561 | GAGAGTGCGGCCAC | pwm | |
| 4214482:4214496 | + | 19.21812628 | GTGACGGGCCTCAC | pwm | |
| 4227264:4227278 | + | 18.04772938 | GTGCACGGACGCAC | pwm | |
| 4233418:4233432 | - | 18.73125571 | GTGACTCCGGTCAC | pwm | |
| 4587601:4587615 | + | 17.99502567 | GTGCACAGCGTCAC | pwm | |
| 5162552:5162566 | - | 18.17043515 | GTGAGGCCGGTGAC | pwm | |
| 5234715:5234729 | - | 19.21812628 | GTGAGGCCCTTCAC | pwm | |
| 5247248:5247262 | + | 18.48189624 | GTGGCCGGCCCCAC | pwm | |
| 5416113:5416127 | + | 18.10002561 | GTGGCGATCCTCAC | pwm | |
| 5624454:5624468 | - | 18.02698488 | GTGAGCGCGCGCAC | pwm | |
| 5675218:5675232 | - | 18.73125571 | GTGGGTCCGGTCAC | pwm | |
| 5909739:5909753 | + | 18.87965575 | GTGACCGCGCTCAC | pwm | |
| 6045008:6045022 | + | 18.01091454 | GTGAGCAAACTCAC | pwm | |
| 6307718:6307732 | + | 18.18024054 | GTGCCCGCACCCAC | pwm | |
| 6553513:6553527 | + | 18.08413674 | GTGACGACAGTCAC | pwm | |
| 6571705:6571719 | - | 18.32864058 | GTGAGGGCGCGCAC | pwm | |
| 7041863:7041877 | - | 19.21812628 | GTGAGTGCCGCCAC | pwm | |
| 7119678:7119692 | + | 18.18024054 | GTGCCCGGCCTCGC | pwm | |
| 7174676:7174690 | + | 18.99609658 | GTGGACACCCTCAC | pwm | |
| 7287324:7287338 | - | 18.18024054 | GTGACCCCGTTCAC | pwm | |
| 7908704:7908718 | - | 19.21812628 | GTGAGGCCCGTCAC | pwm | |
| 8027607:8027621 | + | 18.91647058 | GTGGCGGGGCTCAC | pwm | |
| 8081771:8081785 | + | 18.56192971 | GTGAACATACTCAC | pwm | |
| 8185091:8185105 | + | 18.01376779 | GTGGCAGGACTCAC | pwm | |
| 8318952:8318966 | - | 17.99502567 | GTGGGCCTGGCCAC | pwm | |
| 43838:43852 | - | 18.48189624 | GTGATGCCGGCCAC | pwm | |
| 79574:79588 | + | 18.53459995 | GTGAAGGAACTCAC | pwm | |
| 368833:368847 | + | 18.26935161 | GTGGCGGGCCCCAC | pwm | |
| 570035:570049 | + | 18.66711112 | GTGAAGGCGCTCAC | pwm | |
| 934888:934902 | - | 18.10002561 | GTGCGGCCGGCCAC | pwm | |
| 1347942:1347956 | - | 18.31257024 | GTGAGGGTGGACAC | pwm | |
| 1460118:1460132 | - | 18.23253677 | GCGAGGGCGGCCAC | pwm | |
| 2502097:2502111 | - | 18.18024054 | GTGACCCCGGTCAC | pwm | |
| 2528374:2528388 | + | 18.1641702 | GTGAACAGACGCAC | pwm | |
| 2726303:2726317 | + | 18.73125571 | GTGACCGGACCCAC | pwm | |
| 2861320:2861334 | - | 18.11609595 | GTGAGCGCCCCCAC | pwm | |
| 2889416:2889430 | + | 18.91647058 | GTGCCGGGCCTCAC | pwm | |
| 2895357:2895371 | - | 18.13684044 | GTGCGTCCCTCCAC | pwm | |
| 3043469:3043483 | - | 19.18131145 | GTGAGGGCGGCCAC | pwm | |
| 3093276:3093290 | - | 18.23253677 | GCGAGGGCGTCCAC | pwm | |
| 3157175:3157189 | - | 18.01999214 | GTGACGGCCGCCAC | pwm | |
| 3292667:3292681 | + | 19.12901522 | GTGGCCGGGCTCAC | pwm | |
| 3527726:3527740 | - | 18.26935161 | GTGACGCCCGTCAC | pwm | |
| 3541525:3541539 | - | 18.26935161 | GTGACGCCCGTCAC | pwm | |
| 4388597:4388611 | + | 18.18024054 | GTGGACGGGCTCGC | pwm | |
| 4722014:4722028 | - | 18.96876682 | GTGAGGGCCGCCAC | pwm | |
| 4779294:4779308 | + | 18.13684044 | GTGACGGGACGCAC | pwm | |
| 4858628:4858642 | - | 18.18024054 | GTGACCCCGGTCAC | pwm | |
| 5115084:5115098 | + | 18.26935161 | GTGACGGGCCCCAC | pwm | |
| 5194306:5194320 | + | 18.91647058 | GTGAAGGGGCTCAC | pwm | |
| 5281752:5281766 | + | 18.26935161 | GTGGCGGCACTCGC | pwm | |
| 5442540:5442554 | - | 17.98358478 | GTGAGTTCCCCCAC | pwm | |
| 5447827:5447841 | - | 18.34938508 | GTGCGTCCGTCCAC | pwm | |
| 5474664:5474678 | + | 18.23253677 | GTGGACGCCCTCGC | pwm | |
| 5787832:5787846 | + | 18.08413674 | GTGACGAGCGTCAC | pwm | |
| 5894017:5894031 | + | 18.10002561 | GTGAAGAACCTCAC | pwm | |
| 6401803:6401817 | - | 18.44548889 | GTGAGTACGGGCAC | pwm | |
| 6420261:6420275 | + | 18.78355194 | GTGGAGACCCTCAC | pwm | |
| 7097857:7097871 | - | 18.18024054 | GTGGGCCCGTTCAC | pwm | |
| 7468424:7468438 | - | 18.73125571 | GTGAGTCTCCTCAC | pwm | |
| 7510668:7510682 | + | 18.23253677 | GTGGACGCCCCCAC | pwm | |
| 7662818:7662832 | + | 18.04772938 | GTGCACGGACGCAC | pwm | |
| 7668725:7668739 | + | 18.32864058 | GTGAGCGCGCTCAC | pwm | |
| 7668725:7668739 | - | 18.32864058 | GTGAGCGCGCTCAC | pwm | |
| 8005024:8005038 | - | 18.17043515 | GTGAGTGCGGCGAC | pwm | |
| 8156264:8156278 | - | 18.87965575 | GTGAGGCCGCCCAC | pwm | |
| 8227783:8227797 | + | 19.21812628 | GTGGCGGGCCTCAC | pwm | |
| 40061:40075 | - | 18.18024054 | GCGAGTCCGCTCAC | pwm | |
| 113228:113242 | - | 18.87965575 | GTGAGGGCGGGCAC | pwm | |
| 221110:221124 | - | 18.74714458 | GTGAGTTCGGCCAC | pwm | |
| 251892:251906 | - | 17.98522028 | GTGAGGCTGGTGAC | pwm | |
| 264253:264267 | - | 18.23253677 | GCGAGGGCGGCCAC | pwm | |
| 673094:673108 | + | 18.02203511 | GTCACGAGACTCAC | pwm | |
| 798104:798118 | + | 19.43067092 | GTGGCCGGCCTCAC | pwm | |
| 835250:835264 | - | 18.28524048 | GTGAGGACCTTCAC | pwm | |
| 965672:965686 | + | 18.48189624 | GTGAGGAGCCTCAC | pwm | |
| 1146331:1146345 | - | 18.18024054 | GTGGGGCCGGGCAC | pwm | |
| 1281582:1281596 | + | 18.57800005 | GTGCCCGCGCTCAC | pwm | |
| 1329256:1329270 | + | 18.08413674 | GTGACGAGCGTCAC | pwm | |
| 1569270:1569284 | + | 18.17043515 | GTCACCGGCCTCAC | pwm | |
| 1685809:1685823 | + | 18.23253677 | GTGGACGCCCTCGC | pwm | |
| 1699726:1699740 | - | 18.23253677 | GTGACGGCGGCCAC | pwm | |
| 1803024:1803038 | - | 18.41775165 | GTGAGGGCCCCCAC | pwm | |
| 1928438:1928452 | - | 18.20724998 | GTGAGTCCCTCGAC | pwm | |
| 2004914:2004928 | - | 18.74714458 | GTGAGTACGGTCAC | pwm | |
| 2274980:2274994 | - | 17.99502567 | GCGAGCCTGGTCAC | pwm | |
| 2516020:2516034 | - | 18.27634435 | GTGAGCCCGCGCAC | pwm | |
| 2830463:2830477 | + | 18.36545542 | GTGCAGGCGCTCAC | pwm | |
| 2838601:2838615 | + | 18.87965575 | GTGGGCGGCCTCAC | pwm | |
| 2897287:2897301 | + | 18.19612942 | GTGGGCGAACTCAC | pwm | |
| 2950469:2950483 | - | 18.66711112 | GTGAGCGCCGCCAC | pwm | |
| 3171867:3171881 | - | 18.87965575 | GTGAGCGCGGCCAC | pwm | |
| 3190154:3190168 | - | 18.0473219 | GCGAGGGTGTCCAC | pwm | |
| 3201657:3201671 | - | 18.96876682 | GTGAGGGCCTCCAC | pwm | |
| 3479514:3479528 | + | 18.18024054 | GTGACCGGGGTCAC | pwm | |
| 3692295:3692309 | + | 18.27634435 | GTGCGCGGGCTCAC | pwm | |
| 3835544:3835558 | + | 18.56192971 | GTGGCCATACTCAC | pwm | |
| 4108016:4108030 | + | 17.98358478 | GTGGCGGTGCTCAC | pwm | |
| 4389069:4389083 | + | 18.49778512 | GTGACCGTCCTCAC | pwm | |
| 4488778:4488792 | - | 18.57800005 | GTGAGCGCGTGCAC | pwm | |
| 4594447:4594461 | - | 18.18024054 | GTGACGCCGTGCAC | pwm | |
| 4769294:4769308 | - | 19.12901522 | GTGAGCCCGGCCAC | pwm | |
| 5180705:5180719 | + | 18.26935161 | GTGACGGCACCCAC | pwm | |
| 5244572:5244586 | - | 18.73125571 | GTGGGTCCGGTCAC | pwm | |
| 5426328:5426342 | + | 19.21812628 | GTGGAGGGCCTCAC | pwm | |
| 5467288:5467302 | + | 18.18024054 | GTGCCCGGCATCAC | pwm | |
| 5475079:5475093 | - | 18.18024054 | GTGACCCCGGTCAC | pwm | |
| 5666827:5666841 | + | 18.01091454 | GTGAGCAAACTCAC | pwm | |
| 5737593:5737607 | - | 18.10002561 | GAGAGTGCGGTCAC | pwm | |
| 5851040:5851054 | - | 18.23253677 | GCGAGGGCGGTCAC | pwm | |
| 6308115:6308129 | - | 18.0473219 | GTGACGGTGGTCAC | pwm | |
| 6759603:6759617 | + | 18.0473219 | GTGACCACCCCCAC | pwm | |
| 7198145:7198159 | - | 18.26935161 | GCGAGGCCCGCCAC | pwm | |
| 7246049:7246063 | - | 18.23253677 | GCGAGGGCGTCCAC | pwm | |
| 7288377:7288391 | - | 18.44548889 | GTGAGCCCGTACAC | pwm | |
| 7338186:7338200 | + | 18.01999214 | GTGGCGGCCCTCGC | pwm | |
| 7584878:7584892 | + | 18.10002561 | GTGGAGATCCTCAC | pwm | |
| 7756239:7756253 | - | 19.12901522 | GTGAGCCCGGTCAC | pwm | |
| 7822415:7822429 | + | 18.08413674 | GTGGAGAGCCTCGC | pwm | |
| 8057021:8057035 | - | 18.28524048 | GTGAGGACCTTCAC | pwm | |
| 8158361:8158375 | + | 18.51871108 | GTGGAGGGACTCGC | pwm |