General information
| Regulator | Crp |
|---|---|
| Gene identifier | SCO3571 - SCH17.05 |
| Family | CRP |
| Regulation type | Activator |
| Function | Spore germination and colony development |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
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Based on 15 sites.
Position Frequency Matrix
PFM| T | 0 | 12 | 0 | 2 | 0 | 1 | 0 | 2 | 1 | 0 | 7 | 0 | 2 | 1 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 13 | 0 | 9 | 4 | 3 | 5 | 7 | 5 | 3 | 3 | 2 | 0 | 3 | 2 |
| C | 0 | 1 | 3 | 3 | 5 | 6 | 0 | 4 | 4 | 7 | 3 | 12 | 1 | 9 |
| A | 0 | 0 | 1 | 4 | 5 | 1 | 6 | 2 | 5 | 3 | 1 | 1 | 7 | 1 |
Position Weight Matrix
PWM| T | -1.32 | 2.03 | -1.32 | 0.02 | -1.32 | -0.50 | -1.32 | 0.02 | -0.50 | -1.32 | 1.35 | -1.32 | 0.02 | -0.50 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 2.14 | -1.32 | 1.66 | 0.71 | 0.40 | 0.95 | 1.35 | 0.95 | 0.40 | 0.40 | 0.02 | -1.32 | 0.40 | 0.02 |
| C | -1.32 | -0.50 | 0.40 | 0.40 | 0.95 | 1.17 | -1.32 | 0.71 | 0.71 | 1.35 | 0.40 | 2.03 | -0.50 | 1.66 |
| A | -1.32 | -1.32 | -0.50 | 0.71 | 0.95 | -0.50 | 1.17 | 0.02 | 0.95 | 0.40 | -0.50 | -0.50 | 1.35 | -0.50 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
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| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| SCO3217 | 3529980:3529993 | + | GCGGAGGCACTCAC | ChIP-chip | G. Chan et al. (2012) |
| SCO3229 | 3543004:3543017 | - | GTGACATCGCGTAC | ChIP-chip | G. Chan et al. (2012) |
| SCO3230 | 3543614:3543627 | + | GGGGTGCCGTACAC | ChIP-chip | G. Chan et al. (2012) |
| SCO5085 | 5528328:5528341 | + | GTGACGAGCGACGA | ChIP-chip | G. Chan et al. (2012) |
| SCO5085 | 5528118:5528131 | + | GTCCATGTAATCAC | ChIP-chip | G. Chan et al. (2012) |
| SCO5222 | 5680826:5680839 | + | GTTCGTCTGTGCAC | ChIP-chip | G. Chan et al. (2012) |
| SCO5223 | 5682902:5682915 | + | GTCGCGATACTCAC | ChIP-chip | G. Chan et al. (2012) |
| SCO6271 | 6898863:6898876 | - | GTGAGGAGAATCTT | ChIP-chip | G. Chan et al. (2012) |
| SCO6272 | 6899212:6899225 | + | GTGTCCGGCGGCGC | ChIP-chip | G. Chan et al. (2012) |
| SCO6275 | 6931952:6931965 | - | CCGAGCGTGGTCAC | ChIP-chip | G. Chan et al. (2012) |
| SCO6429 | 7104981:7104994 | + | GTGAAGGCGCCCTG | ChIP-chip | G. Chan et al. (2012) |
| SCO4562 | 4979987:4979999 | + | GTGAAAATGTCAC | ChIP-chip | G. Chan et al. (2012) |
| SCO4921 | 5357128:5357143 | - | GTGTGGGCAAGCTCAC | ChIP-chip | G. Chan et al. (2012) |
| SCO4979 | 5416236:5416249 | + | GTCGCAGCCCCCAC | ChIP-chip | G. Chan et al. (2012) |
| SCO5261 | 5720005:5720017 | + | GTGGCCCAGACAG | ChIP-chip | G. Chan et al. (2012) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|