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General information

Regulator	CsoR
Gene identifier	SLI_4375
Family	CsoR
Regulation type	Repressor
Function	Copper-responsive repressor
Organism	Streptomyces lividans

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Sequence logo

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Based on 6 sites.

PFM
PWM

Position Frequency Matrix

PFM


T	1	6	0	0	0	0	1	5	1	0	1	0	0	0	6	0
G	0	0	0	0	0	0	0	0	3	6	5	6	6	6	0	0
C	0	0	0	6	6	6	5	0	0	0	0	0	0	0	0	0
A	5	0	6	0	0	0	0	1	2	0	0	0	0	0	0	6

Position Weight Matrix

PWM


T	0.09	2.14	-1.32	-1.32	-1.32	-1.32	0.09	1.90	0.09	-1.32	0.09	-1.32	-1.32	-1.32	2.14	-1.32
G	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	1.26	2.14	1.90	2.14	2.14	2.14	-1.32	-1.32
C	-1.32	-1.32	-1.32	2.14	2.14	2.14	1.90	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32
A	1.90	-1.32	2.14	-1.32	-1.32	-1.32	-1.32	0.09	0.79	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	2.14

Predictions

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Score:

Animate
Node Repulsion
Ideal Edge Length

Curated binding sequences
Predicted binding sequences

Gene ID	Location	Orientation	Binding sequence	Method	Reference
SLI_0895	-27	-	ATACCCCTTGGGGGTAT	EMSA	A.K. Chaplin et al. (2015)
SLI_3079	-71	+	ATACCCCCTAGGGGTAA	EMSA	A.K. Chaplin et al. (2015)
SLI_1317	-87	-	TTACCCCCCAGGGGTAT	EMSA	A.K. Chaplin et al. (2015)
SLI_4375	-22	-	ATACCCACCAGGGGTAT	EMSA	A.K. Chaplin et al. (2015)
SLI_1317	13	+	GTACCCCCTAGGGGTAT	EMSA	A.K. Chaplin et al. (2015)
SLI_1063	91	+	ATACCCTAGGGGGGTAT	EMSA	A.K. Chaplin et al. (2015)

Region	Location	Orientation	Score	Binding sequence	Method