General information
| Regulator | CsoR |
|---|---|
| Gene identifier | SLI_4375 |
| Family | CsoR |
| Regulation type | Repressor |
| Function | Copper-responsive repressor |
| Organism | Streptomyces lividans |
External links
Sequence logo
Logo
Based on 6 sites.
Position Frequency Matrix
PFM| T | 1 | 6 | 0 | 0 | 0 | 0 | 1 | 5 | 1 | 0 | 1 | 0 | 0 | 0 | 6 | 0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 6 | 5 | 6 | 6 | 6 | 0 | 0 |
| C | 0 | 0 | 0 | 6 | 6 | 6 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| A | 5 | 0 | 6 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 6 |
Position Weight Matrix
PWM| T | 0.09 | 2.14 | -1.32 | -1.32 | -1.32 | -1.32 | 0.09 | 1.90 | 0.09 | -1.32 | 0.09 | -1.32 | -1.32 | -1.32 | 2.14 | -1.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | 1.26 | 2.14 | 1.90 | 2.14 | 2.14 | 2.14 | -1.32 | -1.32 |
| C | -1.32 | -1.32 | -1.32 | 2.14 | 2.14 | 2.14 | 1.90 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 |
| A | 1.90 | -1.32 | 2.14 | -1.32 | -1.32 | -1.32 | -1.32 | 0.09 | 0.79 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | 2.14 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
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| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| -27 | - | ATACCCCTTGGGGGTAT | EMSA | A.K. Chaplin et al. (2015) | |
| -71 | + | ATACCCCCTAGGGGTAA | EMSA | A.K. Chaplin et al. (2015) | |
| -87 | - | TTACCCCCCAGGGGTAT | EMSA | A.K. Chaplin et al. (2015) | |
| -22 | - | ATACCCACCAGGGGTAT | EMSA | A.K. Chaplin et al. (2015) | |
| 13 | + | GTACCCCCTAGGGGTAT | EMSA | A.K. Chaplin et al. (2015) | |
| 91 | + | ATACCCTAGGGGGGTAT | EMSA | A.K. Chaplin et al. (2015) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|---|---|---|---|---|
| 659106:659122 | + | 23.65121231 | ATACCCCAGGGGGTAA | pwm | |
| 1100836:1100852 | + | 29.15503805 | ATACCCCCGGGGGGTA | pwm | |
| 1100837:1100853 | - | 24.76272063 | TACCCCCGGGGGGTAA | pwm | |
| 1100883:1100899 | + | 21.30328901 | GTACCCCCTAGGGGTA | pwm | |
| 1100884:1100900 | - | 31.90794519 | TACCCCCTAGGGGTAT | pwm | |
| 1209769:1209785 | - | 21.76668953 | CACCCCCTGGAGGTAT | pwm | |
| 2711170:2711186 | + | 21.76668953 | CTCTCCCTAGGGGGTA | pwm | |
| 3888001:3888017 | - | 23.65121231 | AACACCCCTGGGGTAT | pwm | |
| 4551705:4551721 | + | 30.57007555 | ATACCCCTGGTGGGTA | pwm | |
| 5043816:5043832 | - | 21.52965033 | TCCCGCCTAGGGGTTT | pwm | |
| 5711072:5711088 | - | 22.47321401 | TACACCCCCGGGGTAC | pwm | |
| 5840121:5840137 | - | 21.84385739 | TACCCCCCAAGTGAAA | pwm | |
| 6215955:6215971 | - | 22.48128731 | TACCCCGAAGGGGTGA | pwm | |
| 6907314:6907330 | - | 21.37437211 | CACCCACTTGAGGTAT | pwm | |
| 7310401:7310417 | - | 21.99913562 | TCCGCCTCAGGGGTAT | pwm | |
| 256909:256925 | - | 21.84385739 | TACCCAGCAGGGGGAA | pwm | |
| 334377:334393 | + | 21.30328901 | ATACCCCGTGCGGGGA | pwm | |
| 4411:4427 | - | 21.99913562 | GACCCCGCAGGGGTGT | pwm | |
| 927128:927144 | + | 23.88825151 | TTACCCCCGGGGAGTA | pwm | |
| 927129:927145 | - | 23.11064393 | TACCCCCGGGGAGTAT | pwm | |
| 1486625:1486641 | + | 21.76668953 | ATACCCCCAGGGGTAA | pwm | |
| 1833635:1833651 | - | 21.99913562 | TATCCCCCAGGGCGAT | pwm | |
| 1869235:1869251 | + | 23.11064393 | ATACCCCCCAGGGGTA | pwm | |
| 1869236:1869252 | - | 32.37743047 | TACCCCCCAGGGGTAT | pwm | |
| 2234390:2234406 | - | 21.99913562 | TCACCCCCAGGGGGAT | pwm | |
| 3378159:3378175 | + | 22.23617481 | CTACCACTGGGGGTTA | pwm | |
| 3705510:3705526 | + | 24.52568143 | ATACCCCCTAGGGGTA | pwm | |
| 3705511:3705527 | - | 31.90794519 | TACCCCCTAGGGGTAT | pwm | |
| 3961681:3961697 | + | 21.30328901 | TTACCCCGCGGGGGTC | pwm | |
| 4618330:4618346 | + | 25.69560643 | ATACCCCTGCCGGGTA | pwm | |
| 4872603:4872619 | + | 21.99913562 | AATACCCTGGGGGGTA | pwm | |
| 5143399:5143415 | + | 21.52965033 | ATTCCCCTAGGGGGCG | pwm | |
| 5680219:5680235 | + | 31.90794519 | ATACCCCTAGGGGGTA | pwm | |
| 5680220:5680236 | - | 24.52568143 | TACCCCTAGGGGGTAT | pwm | |
| 5945829:5945845 | - | 21.54032821 | TACCCCCGTCGGGTAC | pwm | |
| 6102524:6102540 | - | 22.87360473 | TACGCCCGAGGGGTGT | pwm | |
| 6190343:6190359 | + | 25.93264563 | CTACCCCTGGCGGGTA | pwm | |
| 6596255:6596271 | - | 21.52965033 | GATGCCCTAGGGGTAT | pwm | |
| 6663915:6663931 | + | 21.76668953 | CTACCCCTAGGGGGCC | pwm | |
| 6868352:6868368 | + | 22.23617481 | ACACCCCGGGGCGGTA | pwm | |
| 6871066:6871082 | + | 23.65121231 | TTACCCCTGCGGGTTA | pwm | |
| 8541502:8541518 | + | 21.99913562 | ACACCCCTGCGGGGTC | pwm | |
| 351443:351459 | - | 22.00372873 | TACCCCCTCGGGGTGG | pwm | |
| 556556:556572 | + | 21.76668953 | CTCCCCCTAGGGGGTG | pwm | |
| 630963:630979 | - | 22.87360473 | CATCCCCGAGGGGTAT | pwm | |
| 1244752:1244768 | + | 22.23617481 | GTACCCCTGGGGGGCG | pwm | |
| 1420549:1420565 | - | 25.69560643 | TACCCCCCAGGGGTGC | pwm | |
| 1974949:1974965 | + | 30.57007555 | ATACCCCAGGGGGGTA | pwm | |
| 1974950:1974966 | - | 23.11064393 | TACCCCAGGGGGGTAT | pwm | |
| 2750921:2750937 | + | 23.11064393 | ATACCCCCCAGGGGTA | pwm | |
| 2750922:2750938 | - | 32.37743047 | TACCCCCCAGGGGTAT | pwm | |
| 2999120:2999136 | - | 21.76668953 | TGCCCCCTCGGCGTAT | pwm | |
| 3070216:3070232 | - | 21.61141131 | CACCCTCTTAGGGTAT | pwm | |
| 3408611:3408627 | + | 25.69560643 | GTACCCCTGGGGGGTG | pwm | |
| 3664865:3664881 | - | 24.98908195 | CACCCCCTAGGGGTCT | pwm | |
| 4125216:4125232 | + | 22.23617481 | ATACCCCGGGGGGTGA | pwm | |
| 4240365:4240381 | + | 27.98511305 | ATACCCCTCGTGGGTA | pwm | |
| 4240366:4240382 | - | 22.47321401 | TACCCCTCGTGGGTAT | pwm | |
| 4329601:4329617 | + | 24.52568143 | CGACCCCTTGGGGGTA | pwm | |
| 4411557:4411573 | + | 21.30328901 | ATACCCCCCATGGGTA | pwm | |
| 4411558:4411574 | - | 29.15503805 | TACCCCCCATGGGTAT | pwm | |
| 4411593:4411609 | + | 21.30328901 | GTACCCCCTAGGGGTA | pwm | |
| 4411594:4411610 | - | 31.90794519 | TACCCCCTAGGGGTAT | pwm | |
| 4458359:4458375 | + | 23.11064393 | ATACCCCCCAGGGGTA | pwm | |
| 4458360:4458376 | - | 29.15503805 | TACCCCCCAGGGGTAC | pwm | |
| 4461594:4461610 | + | 27.34768313 | ATACCCTCGGGGGGTA | pwm | |
| 4461595:4461611 | - | 23.34768313 | TACCCTCGGGGGGTAT | pwm | |
| 4461675:4461691 | + | 23.11064393 | ATACCCCCCAGGGGTA | pwm | |
| 4461676:4461692 | - | 32.37743047 | TACCCCCCAGGGGTAT | pwm | |
| 5756146:5756162 | + | 23.65121231 | TTCCCCCTGGGGGGTG | pwm | |
| 6444877:6444893 | - | 22.23617481 | TTCCCTCCAGGGGTGT | pwm | |
| 7535818:7535834 | + | 22.71832651 | ATACCGTACGGGGGTA | pwm |