General information
| Regulator | DmdR1 |
|---|---|
| Gene identifier | SCO4394 - SCD10.26 |
| Family | DtxR |
| Regulation type | Repressor |
| Function | Iron(II)-dependent repressor |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
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Based on 10 sites.
Position Frequency Matrix
PFM| T | 8 | 7 | 1 | 0 | 0 | 9 | 9 | 0 | 0 | 0 | 0 | 10 | 1 | 0 | 0 | 0 | 10 | 4 | 1 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 0 | 1 | 0 | 9 | 8 | 1 | 0 | 0 | 10 | 10 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 |
| C | 1 | 2 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 10 | 0 | 8 | 0 | 10 | 10 | 0 | 2 | 2 |
| A | 1 | 0 | 8 | 0 | 1 | 0 | 1 | 10 | 0 | 0 | 0 | 0 | 1 | 7 | 0 | 0 | 0 | 4 | 7 |
Position Weight Matrix
PWM| T | 1.85 | 1.68 | -0.32 | -1.32 | -1.32 | 2.00 | 2.00 | -1.32 | -1.32 | -1.32 | -1.32 | 2.14 | -0.32 | -1.32 | -1.32 | -1.32 | 2.14 | 1.00 | -0.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | -1.32 | -0.32 | -1.32 | 2.00 | 1.85 | -0.32 | -1.32 | -1.32 | 2.14 | 2.14 | -1.32 | -1.32 | -1.32 | 0.68 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 |
| C | -0.32 | 0.26 | -0.32 | -0.32 | -0.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | 2.14 | -1.32 | 1.85 | -1.32 | 2.14 | 2.14 | -1.32 | 0.26 | 0.26 |
| A | -0.32 | -1.32 | 1.85 | -1.32 | -0.32 | -1.32 | -0.32 | 2.14 | -1.32 | -1.32 | -1.32 | -1.32 | -0.32 | 1.68 | -1.32 | -1.32 | -1.32 | 1.00 | 1.68 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
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| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| SCO2782 | -63 | + | TTAGGTTAGGCTCACCTAA | EMSA | S. Tunca et al. (2007) |
| SCO4049 | -20 | - | TTAGGTTAGGCTCACCTAA | EMSA | S. Tunca et al. (2007) |
| SCO0489 | -20 | + | TTAGGTTAGGCTCGCCTAA | EMSA | S. Tunca et al. (2007) |
| SCO0494 | -34 | - | TGAGGGTAGGCTTACCTCA | EMSA | S. Tunca et al. (2007) |
| SCO0495 | -8 | + | CTCGATTAGGCTCGCCTTA | EMSA | S. Tunca et al. (2007) |
| SCO0498 | -25 | - | TTAGCTTAGGCTCGCCTTA | EMSA | S. Tunca et al. (2007) |
| SCO0799 | -22 | + | TTAGGTAAGGCTCACCTTC | EMSA | S. Tunca et al. (2007) |
| SCO7400 | -5 | - | TTAGGTTAGGCTAACCTTC | EMSA | S. Tunca et al. (2007) |
| SCO5830 | -1 | - | TCAGGTTAGGCTCACCTCT | EMSA | S. Tunca et al. (2007) |
| SCO2350 | -70 | + | ACTCGTTAGGCTCACCTAA | EMSA | S. Tunca et al. (2007) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|