General information
| Regulator | HypR |
|---|---|
| Gene identifier | SCO6294 - SCBAC8D1.07c |
| Family | gntR |
| Regulation type | Repressor |
| Function | L-hydroxyproline utilization repressor |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 7 sites.
Position Frequency Matrix
PFM| T | 7 | 0 | 0 | 0 | 0 | 7 | 0 | 7 | 0 | 0 | 0 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 0 | 6 | 0 | 0 | 0 | 0 | 7 | 0 | 1 | 0 | 0 |
| C | 0 | 0 | 7 | 3 | 0 | 0 | 0 | 0 | 6 | 0 | 7 |
| A | 0 | 1 | 0 | 4 | 7 | 0 | 0 | 0 | 0 | 7 | 0 |
Position Weight Matrix
PWM| T | 2.14 | -1.32 | -1.32 | -1.32 | -1.32 | 2.14 | -1.32 | 2.14 | -1.32 | -1.32 | -1.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| G | -1.32 | 1.94 | -1.32 | -1.32 | -1.32 | -1.32 | 2.14 | -1.32 | -0.04 | -1.32 | -1.32 |
| C | -1.32 | -1.32 | 2.14 | 1.08 | -1.32 | -1.32 | -1.32 | -1.32 | 1.94 | -1.32 | 2.14 |
| A | -1.32 | -0.04 | -1.32 | 1.43 | 2.14 | -1.32 | -1.32 | -1.32 | -1.32 | 2.14 | -1.32 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
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| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| -109 | - | TGCAATGTGAC | DNAse footprinting | M. Kotowska et al. (2019) | |
| 6 | + | TGCCATGTCAC | DNAse footprinting | M. Kotowska et al. (2019) | |
| -283 | + | TGCAATGTCAC | DNAse footprinting | M. Kotowska et al. (2019) | |
| -30 | - | TGCAATGTCAC | DNAse footprinting | M. Kotowska et al. (2019) | |
| 57 | + | TACAATGTCAC | DNAse footprinting | M. Kotowska et al. (2019) | |
| -88 | + | TGCCATGTCAC | DNAse footprinting | M. Kotowska et al. (2019) | |
| 18 | + | TGCCATGTCAC | DNAse footprinting | M. Kotowska et al. (2019) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|---|---|---|---|---|
| 29055:29066 | - | 18.59437927 | GTGACCTGGCA | pwm | |
| 197257:197268 | - | 18.59437927 | GTGACATGGCC | pwm | |
| 532318:532329 | - | 18.59437927 | GTGACATGTCA | pwm | |
| 532319:532330 | + | 18.59437927 | TGACATGTCAC | pwm | |
| 561646:561657 | - | 18.59437927 | GTGACATGTCA | pwm | |
| 827079:827090 | + | 18.59437927 | TGCCATGTCTC | pwm | |
| 971290:971301 | + | 18.59437927 | AGCCATGTCAC | pwm | |
| 1816416:1816427 | - | 18.59437927 | GTGGCATGGCA | pwm | |
| 1842160:1842171 | + | 18.79507662 | TTCCATGTCAC | pwm | |
| 2231963:2231974 | - | 16.9608884 | GTGACAGTGTA | pwm | |
| 2668616:2668627 | + | 18.93951475 | TGCAATGTCAG | pwm | |
| 2835900:2835911 | + | 18.59437927 | AGCCATGTCAC | pwm | |
| 3391834:3391845 | + | 17.16158575 | TTCAATGTGAC | pwm | |
| 3778467:3778478 | + | 16.9608884 | TGCACTGTGAC | pwm | |
| 4606472:4606483 | - | 18.59437927 | GTGCCATGGCA | pwm | |
| 4847899:4847910 | - | 18.59437927 | ATGACATGGCA | pwm | |
| 5161694:5161705 | - | 18.09655819 | GTCACATGGTA | pwm | |
| 5334403:5334414 | - | 18.59437927 | GTGCCATGGCA | pwm | |
| 5659645:5659656 | + | 18.59437927 | TGCCATGCCAC | pwm | |
| 5664879:5664890 | - | 18.59437927 | GGGACATGGCA | pwm | |
| 5719849:5719860 | + | 18.59437927 | AGCCATGTCAC | pwm | |
| 5753773:5753784 | - | 20.42032002 | GTCACATTGCA | pwm | |
| 5786595:5786606 | + | 22.05381089 | TGCCATGTCAC | pwm | |
| 6019200:6019211 | + | 17.16158575 | TTCAATGTGAC | pwm | |
| 6044946:6044957 | + | 18.93951475 | TGCAATGTCGC | pwm | |
| 6265530:6265541 | - | 18.93951475 | GTGACATTGCT | pwm | |
| 6477274:6477285 | + | 22.39894637 | TGCAATGTCAC | pwm | |
| 6742837:6742848 | + | 18.59437927 | CGCCATGTCAC | pwm | |
| 6831981:6831992 | - | 16.81645027 | GTCACATGGGA | pwm | |
| 6932049:6932060 | + | 16.9608884 | AGCAATGTGAC | pwm | |
| 6948547:6948558 | - | 22.39894637 | GTGACATTGCA | pwm | |
| 6954402:6954413 | + | 20.42032002 | TACAATGTCAC | pwm | |
| 7457676:7457687 | - | 18.59437927 | GTGACGTGGCA | pwm | |
| 7532297:7532308 | - | 16.9608884 | GTCACATTCCA | pwm | |
| 7857212:7857223 | + | 18.59437927 | GGCCATGTCAC | pwm | |
| 7977330:7977341 | + | 22.05381089 | TGCCATGTCAC | pwm | |
| 8081910:8081921 | + | 22.05381089 | TGCCATGTCAC | pwm | |
| 8433201:8433212 | - | 18.59437927 | GTGACATGACA | pwm | |
| 8663526:8663537 | - | 16.9608884 | GTGACGTTGTA | pwm | |
| 298130:298141 | - | 18.93951475 | GTGAAATTGCA | pwm | |
| 3400:3411 | - | 18.59437927 | GTGACCTGGCA | pwm | |
| 443914:443925 | + | 18.59437927 | TGCCCTGTCAC | pwm | |
| 917156:917167 | - | 18.59437927 | GTGACCTGGCA | pwm | |
| 1244276:1244287 | + | 18.59437927 | TGCCATGTCGC | pwm | |
| 1380222:1380233 | + | 18.59437927 | TGCCATGTCCC | pwm | |
| 1404375:1404386 | - | 16.9608884 | GTCACCTTGCA | pwm | |
| 1471770:1471781 | - | 16.9608884 | GTCACTTTGCA | pwm | |
| 1542243:1542254 | + | 18.59437927 | CGCCATGTCAC | pwm | |
| 1906790:1906801 | + | 16.9608884 | TACAATGGCAC | pwm | |
| 1913047:1913058 | - | 18.93951475 | GTGAAATTGCA | pwm | |
| 1914728:1914739 | - | 20.42032002 | GTGACATTGTA | pwm | |
| 1922473:1922484 | + | 22.39894637 | TGCAATGTCAC | pwm | |
| 2021761:2021772 | + | 18.59437927 | TGCCATGTCCC | pwm | |
| 2067136:2067147 | + | 18.59437927 | TGCCTTGTCAC | pwm | |
| 2145111:2145122 | + | 16.9608884 | TGCACTGTGAC | pwm | |
| 2358002:2358013 | - | 18.59437927 | GTGACATGACA | pwm | |
| 2406462:2406473 | - | 18.59437927 | GTGCCATGGCA | pwm | |
| 2453031:2453042 | + | 18.93951475 | CGCAATGTCAC | pwm | |
| 3253714:3253725 | - | 18.59437927 | GGGACATGGCA | pwm | |
| 3665169:3665180 | + | 18.59437927 | GGCCATGTCAC | pwm | |
| 4220017:4220028 | + | 18.59437927 | TGCCATGTCAG | pwm | |
| 4266586:4266597 | - | 18.93951475 | GTGACCTTGCA | pwm | |
| 4391559:4391570 | - | 18.59437927 | GTGACGTGGCA | pwm | |
| 4407386:4407397 | - | 18.59437927 | GTGGCATGGCA | pwm | |
| 4496932:4496943 | + | 18.59437927 | TGCCAGGTCAC | pwm | |
| 4713875:4713886 | - | 18.93951475 | GTGACGTTGCA | pwm | |
| 4741222:4741233 | - | 18.93951475 | GTGACACTGCA | pwm | |
| 5196074:5196085 | - | 18.59437927 | GTGCCATGGCA | pwm | |
| 5465291:5465302 | + | 18.59437927 | TGTCATGTCAC | pwm | |
| 5577348:5577359 | + | 18.59437927 | TGCCACGTCAC | pwm | |
| 5810483:5810494 | - | 18.59437927 | GTGACATGGCT | pwm | |
| 5923627:5923638 | - | 16.81645027 | GTCACATGGGA | pwm | |
| 6008779:6008790 | - | 18.59437927 | GCGACATGGCA | pwm | |
| 6205498:6205509 | + | 19.65171244 | TGCGATGTCAC | pwm | |
| 6381173:6381184 | + | 16.9608884 | TACACTGTCAC | pwm | |
| 6545285:6545296 | - | 18.59437927 | GAGACATGGCA | pwm | |
| 6777502:6777513 | - | 18.79507662 | GTGACATGGAA | pwm | |
| 6924894:6924905 | + | 18.59437927 | GGCCATGTCAC | pwm | |
| 7810402:7810413 | - | 18.79507662 | GTGACATGGGA | pwm | |
| 8008312:8008323 | - | 18.59437927 | GTGACATGTCA | pwm | |
| 8008313:8008324 | + | 18.59437927 | TGACATGTCAC | pwm | |
| 8221759:8221770 | - | 18.79507662 | GTAACATGGCA | pwm | |
| 258064:258075 | - | 18.93951475 | GTGACATTCCA | pwm | |
| 336941:336952 | + | 18.59437927 | TGCCAGGTCAC | pwm | |
| 513535:513546 | + | 18.93951475 | TGCACTGTCAC | pwm | |
| 1006874:1006885 | + | 18.59437927 | TGCCGTGTCAC | pwm | |
| 1500621:1500632 | + | 18.79507662 | TTCCATGTCAC | pwm | |
| 1542770:1542781 | + | 18.59437927 | TGCCATGTCCC | pwm | |
| 1679641:1679652 | + | 18.59437927 | TGCCATGTCAG | pwm | |
| 1934576:1934587 | - | 16.9608884 | GTGACAGTGTA | pwm | |
| 2127699:2127710 | + | 18.59437927 | TGCCGTGTCAC | pwm | |
| 2157290:2157301 | - | 22.05381089 | GTGACATGGCA | pwm | |
| 2396402:2396413 | + | 18.59437927 | TGCCATGTCGC | pwm | |
| 2588945:2588956 | + | 18.59437927 | AGCCATGTCAC | pwm | |
| 2682540:2682551 | + | 20.07518454 | TGCCATGTGAC | pwm | |
| 4322677:4322688 | - | 18.93951475 | GTGACGTTGCA | pwm | |
| 4367437:4367448 | - | 18.93951475 | GTGACAGTGCA | pwm | |
| 4445041:4445052 | - | 18.59437927 | GCGACATGGCA | pwm | |
| 4543318:4543329 | + | 18.59437927 | CGCCATGTCAC | pwm | |
| 4918792:4918803 | - | 16.9608884 | GTCACGTTGCA | pwm | |
| 5086177:5086188 | - | 19.65171244 | GTGACATCGCA | pwm | |
| 5418737:5418748 | + | 18.59437927 | TGCCATGACAC | pwm | |
| 5755857:5755868 | + | 18.59437927 | GGCCATGTCAC | pwm | |
| 5767893:5767904 | + | 18.59437927 | TGCCAGGTCAC | pwm | |
| 5893483:5893494 | + | 18.59437927 | TGCCAGGTCAC | pwm | |
| 6020852:6020863 | - | 18.59437927 | GCGACATGGCA | pwm | |
| 6212012:6212023 | + | 16.9608884 | TGCAACGTGAC | pwm | |
| 6270467:6270478 | - | 20.42032002 | GTGACATTGTA | pwm | |
| 6779006:6779017 | - | 18.59437927 | GTGACGTGGCA | pwm | |
| 6864880:6864891 | + | 16.9608884 | TGCAAGGTGAC | pwm | |
| 6883284:6883295 | - | 18.59437927 | GTGACAAGGCA | pwm | |
| 7838735:7838746 | + | 16.9608884 | TGGAATGTGAC | pwm | |
| 7838761:7838772 | - | 16.9608884 | GTGAAATTGTA | pwm | |
| 7838880:7838891 | + | 16.9608884 | TGCAATGTGAA | pwm | |
| 7973173:7973184 | - | 18.59437927 | GTGTCATGGCA | pwm | |
| 8007062:8007073 | - | 18.59437927 | GAGACATGGCA | pwm | |
| 8007701:8007712 | - | 19.65171244 | GTGACATCGCA | pwm | |
| 8216770:8216781 | - | 18.59437927 | GTGACATGGCG | pwm |