General information
| Regulator | HypR |
|---|---|
| Gene identifier | SCO6294 - SCBAC8D1.07c |
| Family | gntR |
| Regulation type | Repressor |
| Function | L-hydroxyproline utilization repressor |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 7 sites.
Position Frequency Matrix
PFM| T | 7 | 0 | 0 | 0 | 0 | 7 | 0 | 7 | 0 | 0 | 0 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 0 | 6 | 0 | 0 | 0 | 0 | 7 | 0 | 1 | 0 | 0 |
| C | 0 | 0 | 7 | 3 | 0 | 0 | 0 | 0 | 6 | 0 | 7 |
| A | 0 | 1 | 0 | 4 | 7 | 0 | 0 | 0 | 0 | 7 | 0 |
Position Weight Matrix
PWM| T | 2.14 | -1.32 | -1.32 | -1.32 | -1.32 | 2.14 | -1.32 | 2.14 | -1.32 | -1.32 | -1.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| G | -1.32 | 1.94 | -1.32 | -1.32 | -1.32 | -1.32 | 2.14 | -1.32 | -0.04 | -1.32 | -1.32 |
| C | -1.32 | -1.32 | 2.14 | 1.08 | -1.32 | -1.32 | -1.32 | -1.32 | 1.94 | -1.32 | 2.14 |
| A | -1.32 | -0.04 | -1.32 | 1.43 | 2.14 | -1.32 | -1.32 | -1.32 | -1.32 | 2.14 | -1.32 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
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| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| SCO5281 | -109 | - | TGCAATGTGAC | DNAse footprinting | M. Kotowska et al. (2019) |
| SCO5315 | 6 | + | TGCCATGTCAC | DNAse footprinting | M. Kotowska et al. (2019) |
| SCO5911 | -283 | + | TGCAATGTCAC | DNAse footprinting | M. Kotowska et al. (2019) |
| SCO6289 | -30 | - | TGCAATGTCAC | DNAse footprinting | M. Kotowska et al. (2019) |
| SCO6294 | 57 | + | TACAATGTCAC | DNAse footprinting | M. Kotowska et al. (2019) |
| SCO7176 | -88 | + | TGCCATGTCAC | DNAse footprinting | M. Kotowska et al. (2019) |
| SCO7273 | 18 | + | TGCCATGTCAC | DNAse footprinting | M. Kotowska et al. (2019) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|