General information
| Regulator | LexA |
|---|---|
| Gene identifier | SCO5803 - SC4H2.24c |
| Family | LexA |
| Regulation type | Repressor |
| Function | Repressor of DNA damage response |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 9 sites.
Position Frequency Matrix
PFM| T | 8 | 0 | 0 | 0 | 0 | 6 | 2 | 4 | 0 | 8 | 0 | 9 | 7 | 1 | 2 | 0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 0 | 0 | 9 | 0 | 0 | 0 | 7 | 1 | 2 | 0 | 9 | 0 | 2 | 0 | 6 | 1 |
| C | 0 | 8 | 0 | 1 | 0 | 2 | 0 | 4 | 5 | 1 | 0 | 0 | 0 | 8 | 1 | 1 |
| A | 1 | 1 | 0 | 8 | 9 | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 7 |
Position Weight Matrix
PWM| T | 1.98 | -1.32 | -1.32 | -1.32 | -1.32 | 1.62 | 0.37 | 1.12 | -1.32 | 1.98 | -1.32 | 2.14 | 1.81 | -0.24 | 0.37 | -1.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | -1.32 | -1.32 | 2.14 | -1.32 | -1.32 | -1.32 | 1.81 | -0.24 | 0.37 | -1.32 | 2.14 | -1.32 | 0.37 | -1.32 | 1.62 | -0.24 |
| C | -1.32 | 1.98 | -1.32 | -0.24 | -1.32 | 0.37 | -1.32 | 1.12 | 1.39 | -0.24 | -1.32 | -1.32 | -1.32 | 1.98 | -0.24 | -0.24 |
| A | -0.24 | -0.24 | -1.32 | 1.98 | 2.14 | -0.24 | -1.32 | -1.32 | 0.37 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | 1.81 |
| Animate |
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| Node Repulsion | |
| Ideal Edge Length | |
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| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| SCO1740 | -57 | - | TCGCACACACATTCGA | Homology searches | P.S. Novichkov et al. (2013) |
| SCO1739 | -56 | - | GGGAACAGACGTTCGA | Homology searches | P.S. Novichkov et al. (2013) |
| SCO1959 | -59 | - | TCGAATGCACGTGCTA | Homology searches | P.S. Novichkov et al. (2013) |
| SCO5769 | -110 | + | TCGAACATCCATTCTT | Homology searches | P.S. Novichkov et al. (2013) |
| SCO5803 | -134 | - | TCGAACGTGTGTTTGG | Homology searches | P.S. Novichkov et al. (2013) |
| SCO5822 | -135 | + | TCGAACAGGCATGCGA | Homology searches | P.S. Novichkov et al. (2013) |
| SCO7302 | -20 | - | TAGAACAGACTTTCGA | Homology searches | P.S. Novichkov et al. (2013) |
| SCP1.33c | -11 | - | TCGAATTCCTGTTCGA | Homology searches | P.S. Novichkov et al. (2013) |
| SCP1.321 | -11 | + | TCGAATTCCTGTTCGA | Homology searches | P.S. Novichkov et al. (2013) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|