General information
| Regulator | NrdR |
|---|---|
| Gene identifier | SCO5804 - SC4H2.25 |
| Family | NrdR |
| Regulation type | Repressor |
| Function | Represses ribonucleotide reductase encoding genes |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
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Based on 4 sites.
Position Frequency Matrix
PFM| T | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 4 | 0 | 4 | 0 | 1 | 0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 3 | 0 | 3 | 3 | 4 |
| C | 4 | 0 | 4 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| A | 0 | 4 | 0 | 3 | 4 | 0 | 3 | 0 | 0 | 0 | 1 | 0 | 0 |
Position Weight Matrix
PWM| T | -1.32 | -1.32 | -1.32 | 0.49 | -1.32 | -1.32 | 0.49 | 2.14 | -1.32 | 2.14 | -1.32 | 0.49 | -1.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | 1.26 | -1.32 | -1.32 | 1.77 | -1.32 | 1.77 | 1.77 | 2.14 |
| C | 2.14 | -1.32 | 2.14 | -1.32 | -1.32 | 1.26 | -1.32 | -1.32 | 0.49 | -1.32 | -1.32 | -1.32 | -1.32 |
| A | -1.32 | 2.14 | -1.32 | 1.77 | 2.14 | -1.32 | 1.77 | -1.32 | -1.32 | -1.32 | 0.49 | -1.32 | -1.32 |
| Animate |
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| Node Repulsion | |
| Ideal Edge Length | |
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| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| SCO5227 | -26 | - | ACACAACATCTGGGGG | EMSA | I. Grinberg et al. (2006) |
| SCO5227 | 5 | - | GCACAAGATGTATGCT | EMSA | I. Grinberg et al. (2006) |
| SCO5804 | -140 | + | TCCCCACATCTAGTGG | EMSA | I. Grinberg et al. (2006) |
| SCO5804 | -109 | + | AGCCCACAAGTTGTGG | EMSA | I. Grinberg et al. (2006) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|