General information
| Regulator | NrdR |
|---|---|
| Gene identifier | SCO5804 - SC4H2.25 |
| Family | NrdR |
| Regulation type | Repressor |
| Function | Represses ribonucleotide reductase encoding genes |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 4 sites.
Position Frequency Matrix
PFM| T | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 4 | 0 | 4 | 0 | 1 | 0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 3 | 0 | 3 | 3 | 4 |
| C | 4 | 0 | 4 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| A | 0 | 4 | 0 | 3 | 4 | 0 | 3 | 0 | 0 | 0 | 1 | 0 | 0 |
Position Weight Matrix
PWM| T | -1.32 | -1.32 | -1.32 | 0.49 | -1.32 | -1.32 | 0.49 | 2.14 | -1.32 | 2.14 | -1.32 | 0.49 | -1.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | 1.26 | -1.32 | -1.32 | 1.77 | -1.32 | 1.77 | 1.77 | 2.14 |
| C | 2.14 | -1.32 | 2.14 | -1.32 | -1.32 | 1.26 | -1.32 | -1.32 | 0.49 | -1.32 | -1.32 | -1.32 | -1.32 |
| A | -1.32 | 2.14 | -1.32 | 1.77 | 2.14 | -1.32 | 1.77 | -1.32 | -1.32 | -1.32 | 0.49 | -1.32 | -1.32 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
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| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| -26 | - | ACACAACATCTGGGGG | EMSA | I. Grinberg et al. (2006) | |
| 5 | - | GCACAAGATGTATGCT | EMSA | I. Grinberg et al. (2006) | |
| -140 | + | TCCCCACATCTAGTGG | EMSA | I. Grinberg et al. (2006) | |
| -109 | + | AGCCCACAAGTTGTGG | EMSA | I. Grinberg et al. (2006) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|---|---|---|---|---|
| 1379586:1379599 | - | 19.03358535 | CCCAGCAGTTGTG | pwm | |
| 1715733:1715746 | - | 20.31369327 | CACACATCTTGTC | pwm | |
| 1839533:1839546 | - | 18.87830712 | CCCACAGCTCGTG | pwm | |
| 3274714:3274727 | + | 20.31369327 | CACACGATGTGTG | pwm | |
| 3543298:3543311 | - | 20.31369327 | CACACATCTTGTT | pwm | |
| 4546049:4546062 | + | 21.59380119 | CGCAAGATGTGGG | pwm | |
| 5465391:5465404 | - | 19.03358535 | CCCAGATCAAGTG | pwm | |
| 5688412:5688425 | - | 22.49301697 | CATACATCTTGTG | pwm | |
| 5688443:5688456 | - | 23.77312488 | CCCAGATGTTGTG | pwm | |
| 6346872:6346885 | - | 23.77312488 | CCCACATCTAGTG | pwm | |
| 6346903:6346916 | - | 23.77312488 | CCCACAAGTTGTG | pwm | |
| 6346905:6346918 | + | 20.31369327 | CACAAGTTGTGGT | pwm | |
| 7174947:7174960 | - | 19.03358535 | CACAGATCTTGCG | pwm | |
| 7444112:7444125 | - | 18.87830712 | CCCACACGTGGTG | pwm | |
| 7839065:7839078 | + | 19.00883868 | CACAGTATGTGGG | pwm | |
| 187703:187716 | - | 20.31369327 | CCCACAAGCTGTG | pwm | |
| 261278:261291 | - | 19.03358535 | CCCACAACCAGTG | pwm | |
| 340557:340570 | + | 19.40555412 | CACCACTTCTGGG | pwm | |
| 82899:82912 | - | 18.87830712 | CCCACACGTGGTG | pwm | |
| 594324:594337 | + | 20.31369327 | CACAAGATCCGGG | pwm | |
| 659362:659375 | - | 19.00883868 | CCCACATATTGTT | pwm | |
| 1369385:1369398 | - | 19.03358535 | CCCCGAAGTTGTG | pwm | |
| 2027087:2027100 | + | 21.21290905 | CACTAGATCTAGG | pwm | |
| 2481308:2481321 | + | 19.40555412 | CACCACATCTGTG | pwm | |
| 2717304:2717317 | + | 25.0532328 | CACAACATGTGGG | pwm | |
| 3538344:3538357 | + | 19.03358535 | CACAACTCCTGGG | pwm | |
| 4189192:4189205 | - | 18.87830712 | CCCACACGTCGTG | pwm | |
| 5017461:5017474 | - | 18.87830712 | CCCACACCTCGTG | pwm | |
| 5604881:5604894 | - | 19.03358535 | CCCAGATGTAGCG | pwm | |
| 6068634:6068647 | + | 20.68566204 | CACGACATCTGGG | pwm | |
| 7354161:7354174 | - | 19.03358535 | CCTGGATGTTGTG | pwm | |
| 784157:784170 | + | 19.03358535 | CTCAACTTGTGTG | pwm | |
| 905840:905853 | + | 19.03358535 | CACACGTTCTGGG | pwm | |
| 4565421:4565434 | - | 18.87830712 | CCCACACGTCGTG | pwm | |
| 5053225:5053238 | - | 19.03358535 | CCCAGATCAAGTG | pwm | |
| 5215495:5215508 | + | 21.59380119 | CACATGATGTGGG | pwm | |
| 5253909:5253922 | - | 25.0532328 | CCCACATGTTGTG | pwm | |
| 6090968:6090981 | - | 20.31369327 | CCCACATGTAGCG | pwm | |
| 6977974:6977987 | + | 21.96576996 | CACGACATGTGGG | pwm |