LogoMotif

General information

Regulator	NrtR
Gene identifier	SCO1767 - SCI51.07c
Family	NrtR
Regulation type	Repressor
Function	NAD synthesis repressor
Organism	Streptomyces coelicolor

External links

Sequence logo

Logo

Based on 19 sites.

PFM
PWM

Position Frequency Matrix

PFM


T	12	18	5	13	3	0	19	0	0	3	6	3	12	0	0	0	7	0	15	14	0
G	0	0	0	5	2	19	0	0	7	5	6	5	0	19	0	0	12	0	0	0	1
C	0	0	3	0	9	0	0	19	2	8	3	7	2	0	0	19	0	0	3	0	0
A	7	1	11	1	5	0	0	0	10	3	4	4	5	0	19	0	0	19	1	5	18

Position Weight Matrix

PWM


T	1.55	2.07	0.54	1.65	0.04	-1.32	2.14	-1.32	-1.32	0.04	0.73	0.04	1.55	-1.32	-1.32	-1.32	0.91	-1.32	1.83	1.74	-1.32
G	-1.32	-1.32	-1.32	0.54	-0.28	2.14	-1.32	-1.32	0.91	0.54	0.73	0.54	-1.32	2.14	-1.32	-1.32	1.55	-1.32	-1.32	-1.32	-0.71
C	-1.32	-1.32	0.04	-1.32	1.20	-1.32	-1.32	2.14	-0.28	1.06	0.04	0.91	-0.28	-1.32	-1.32	2.14	-1.32	-1.32	0.04	-1.32	-1.32
A	0.91	-0.71	1.44	-0.71	0.54	-1.32	-1.32	-1.32	1.32	0.04	0.31	0.31	0.54	-1.32	2.14	-1.32	-1.32	2.14	-0.71	0.54	2.07

Predictions

Scroll zoom

Score:

Animate
Node Repulsion
Ideal Edge Length

Curated binding sequences
Predicted binding sequences

Gene ID	Location	Orientation	Binding sequence	Method	Reference
SAV_6513	-68	+	TATTGGTCGAAGTGACTATTA	Homology searches	P.S. Novichkov et al. (2013)
SAV_6513	-84	+	TTATAGTCGAGATGACTATTG	Homology searches	P.S. Novichkov et al. (2013)
SAV_2447	-10	-	TTATCGTCAGGCAGACGACTA	Homology searches	P.S. Novichkov et al. (2013)
SAV_5948	-10	-	ATCGTGTCGCTTTGACGATTA	Homology searches	P.S. Novichkov et al. (2013)
SAV_2321	-21	+	TTATCGTCGTAGTGACGAAAA	Homology searches	P.S. Novichkov et al. (2013)
SAV_2321	-55	+	ATTTCGTCCCCTTGACGATAA	Homology searches	P.S. Novichkov et al. (2013)
SCO1767	-15	-	TTATAGTCGCAGTGACTATTA	Homology searches	P.S. Novichkov et al. (2013)
SCO2238	41	-	ATTGCGTCGTTCTGACGATTA	Homology searches	P.S. Novichkov et al. (2013)
SGR_5730	-11	+	TTATAGTCAGAGTGACTATTA	Homology searches	P.S. Novichkov et al. (2013)
SGR_5258	-11	-	ATCGCGTCAGAAAGACGATTA	Homology searches	P.S. Novichkov et al. (2013)
SGR_831	-16	+	TTATCGTCGCCATGACGAAAT	Homology searches	P.S. Novichkov et al. (2013)
SGR_1704	-10	-	TTATCGTCAGGCAGACGACTA	Homology searches	P.S. Novichkov et al. (2013)
SGR_831	-49	+	TAATAGTCACCTTGACTCTAA	Homology searches	P.S. Novichkov et al. (2013)
SCAB_71891	-52	+	TTATAGTCGTTCTGACTATTA	Homology searches	P.S. Novichkov et al. (2013)
SCAB_24481	-31	-	TTATCGTCAGGCAGACGACTA	Homology searches	P.S. Novichkov et al. (2013)
SCAB_66451	-31	-	ATAATGTCGCTCTGACGATTA	Homology searches	P.S. Novichkov et al. (2013)
SCAB_23161	-59	+	TTATCGTCTGAGTGACACTAA	Homology searches	P.S. Novichkov et al. (2013)
SCAB_23161	-92	+	ATCTCGTCCCCTTGACGATAA	Homology searches	P.S. Novichkov et al. (2013)
SCAB_71891	-36	+	TATTAGTCATGGTGACCATAA	Homology searches	P.S. Novichkov et al. (2013)

Region	Location	Orientation	Score	Binding sequence	Method