General information
| Regulator | NuR |
|---|---|
| Gene identifier | SCO4180 - SCD66.17 |
| Family | Fur |
| Regulation type | Repressor |
| Function | Nickel-responsive regulator |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 4 sites.
Position Frequency Matrix
PFM| T | 4 | 4 | 0 | 0 | 0 | 1 | 0 | 3 | 1 | 1 | 4 | 2 | 3 | 0 | 0 | 0 | 0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 0 | 0 | 4 | 0 | 2 | 0 | 3 | 1 | 1 | 2 | 0 | 1 | 0 | 4 | 0 | 0 | 1 |
| C | 0 | 0 | 0 | 4 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 4 | 0 | 0 |
| A | 0 | 0 | 0 | 0 | 2 | 3 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 4 | 3 |
Position Weight Matrix
PWM| T | 2.14 | 2.14 | -1.32 | -1.32 | -1.32 | 0.49 | -1.32 | 1.77 | 0.49 | 0.49 | 2.14 | 1.26 | 1.77 | -1.32 | -1.32 | -1.32 | -1.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | -1.32 | -1.32 | 2.14 | -1.32 | 1.26 | -1.32 | 1.77 | 0.49 | 0.49 | 1.26 | -1.32 | 0.49 | -1.32 | 2.14 | -1.32 | -1.32 | 0.49 |
| C | -1.32 | -1.32 | -1.32 | 2.14 | -1.32 | -1.32 | 0.49 | -1.32 | 1.26 | -1.32 | -1.32 | -1.32 | 0.49 | -1.32 | 2.14 | -1.32 | -1.32 |
| A | -1.32 | -1.32 | -1.32 | -1.32 | 1.26 | 1.77 | -1.32 | -1.32 | -1.32 | 0.49 | -1.32 | 0.49 | -1.32 | -1.32 | -1.32 | 2.14 | 1.77 |
Hidden Markov Model (HMM)
| Consensus | -TTGCGAG-2-A-2-TGCAAT- | TTGCGAG-2-A-2-TGCAAT |
|---|---|---|
| Alignment length | 20 | 19 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
Loading...
| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| -32 | + | ATTGCGAGTGATGTGCAAT | EMSA | Y. Jun An et al. (2009) | |
| -19 | + | CTTGCGAACGAGTTGCAAC | EMSA | Y. Jun An et al. (2009) | |
| -22 | + | GTTGCAAGGCTTTTGCAAT | EMSA | Y. Jun An et al. (2009) | |
| -19 | - | GCTGCATACAACACGCAATA | EMSA | Y. Jun An et al. (2009) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|---|---|---|---|---|
| 282331:282348 | + | 21.22565323 | TTTCGAGTCTTACGAAA | pwm | |
| 430049:430066 | + | 20.06537432 | TTGTACGTCGTTGGCAG | pwm | |
| 535687:535704 | + | 20.72315289 | TTGGAAGGCGGGTGCAG | pwm | |
| 769436:769453 | - | 23.65533751 | TTTCATACGTCTTGCAA | pwm | |
| 1816400:1816417 | + | 20.84476109 | TTGCGTGGGGTGCGCCG | pwm | |
| 2118957:2118974 | + | 21.07037501 | TTGCGAGCAGTGTGCCA | pwm | |
| 2481872:2481889 | + | 22.87772993 | TTGAGGGTGGTGTGCAA | pwm | |
| 2860048:2860065 | + | 28.92212405 | TTGCAAGGCTTTTGCAA | pwm | |
| 3083929:3083946 | + | 19.94554531 | GTCCGTGTCATGTGCAG | pwm | |
| 3341231:3341248 | - | 21.62236867 | TTGCGAACCCGACACAA | pwm | |
| 3461325:3461342 | - | 28.41962371 | TTGCGAACGAGTTGCAA | pwm | |
| 3541758:3541775 | + | 20.72315289 | GTGCGAGTCGTGCGAAG | pwm | |
| 4303170:4303187 | - | 22.24469802 | GTGCGAACGCATCGCAA | pwm | |
| 4383576:4383593 | - | 21.22565323 | TTGCACATGCCTTGGAC | pwm | |
| 4598588:4598605 | - | 19.82393711 | TTTCAAACAACTCCCTA | pwm | |
| 5087602:5087619 | - | 21.22565323 | TCGCACAAGAGTCGCAC | pwm | |
| 5224183:5224200 | + | 20.82001443 | TTGCGAGGTTTATGCCT | pwm | |
| 5302332:5302349 | + | 20.84476109 | GTGCGTCTCTTGCGCAG | pwm | |
| 5441854:5441871 | + | 22.87772993 | TGGCGCGTCTTGTGCAA | pwm | |
| 5456025:5456042 | + | 20.72315289 | GTGCGAGGCGTGTCCAG | pwm | |
| 5468464:5468481 | + | 21.59762201 | TTGCGAGTGTTTCCCAT | pwm | |
| 7135226:7135243 | + | 28.64701681 | TTGCGAGTGATGTGCAA | pwm | |
| 7147166:7147183 | - | 20.82001443 | TTGCGCAGCAGTCGCAG | pwm | |
| 7378316:7378333 | + | 20.82001443 | CTGCATATGATGTGCAA | pwm | |
| 7378316:7378333 | - | 21.96959079 | CTGCATATGATGTGCAA | pwm | |
| 7646229:7646246 | + | 20.69840623 | TCGCGAGTGGTCTGGAA | pwm | |
| 7792741:7792758 | - | 21.59762201 | TAGCGCAAGTCTCGCAA | pwm | |
| 84773:84790 | - | 19.94554531 | TCGCATACCAGACCCAA | pwm | |
| 214754:214771 | + | 20.72315289 | TTGGGAGTGGTTCCCAG | pwm | |
| 134076:134096 | - | 0.3 | AGCTGCAGGACATGTTCAA | hmm | |
| 466353:466374 | - | 1.0 | CGGTGCACCTGTCCTGCAAC | hmm | |
| 662361:662379 | + | 0.9 | TTTGCATACCATGCAAC | hmm | |
| 967906:967926 | - | 1.7 | GGCTGCGGGCCACGCGCAA | hmm | |
| 1116137:1116158 | + | 1.0 | GCTGCCGATGAGCCGCAACT | hmm | |
| 1301949:1301970 | + | 0.4 | CCTGCGCAGGGAGCGCAACT | hmm | |
| 1712070:1712091 | - | 0.6 | AGCTGCTAACCTTGTGTAAC | hmm | |
| 2048147:2048168 | - | 0.8 | TGCTACGAGGTATCTGTAAC | hmm | |
| 2298950:2298971 | - | 1.4 | ACTTCCGTACCAACCGCAAC | hmm | |
| 2400394:2400413 | + | 2.3 | GCTGCAAAAATGTGCAAG | hmm | |
| 2467378:2467397 | - | 0.3 | CGTTGCAGCAGGCGCAAC | hmm | |
| 2527875:2527895 | + | 1.3 | ACTGCGGAAAACCGCAATT | hmm | |
| 2848627:2848648 | - | 0.8 | CCGTGCGAGTACCCCGTAAT | hmm | |
| 2860046:2860067 | + | 7.2 | GTTGCAAGGCTTTTGCAATA | hmm | |
| 2860047:2860067 | - | 4.9 | TATTGCAAAAGCCTTGCAA | hmm | |
| 3203528:3203547 | + | 3.1 | GTTGCAACATATGCAATG | hmm | |
| 3203528:3203547 | - | 1.4 | CATTGCATATGTTGCAAC | hmm | |
| 3461323:3461344 | + | 8.1 | CTTGCGAACGAGTTGCAACT | hmm | |
| 3461324:3461344 | - | 1.6 | AGTTGCAACTCGTTCGCAA | hmm | |
| 3650666:3650690 | + | 1.6 | GTTGCGCGCAACAACACGCAATG | hmm | |
| 3985822:3985843 | + | 0.7 | ATTGCCGACTTCCGGCAATC | hmm | |
| 4099474:4099494 | + | 2.6 | CTTGCGAACTTTCGCAATT | hmm | |
| 4137619:4137640 | + | 0.2 | AATGCGTGGTGGGGGCAATC | hmm | |
| 4171282:4171302 | + | 1.7 | TTTGCGAAGATCGTACAAA | hmm | |
| 4303168:4303189 | + | 2.0 | GGTGCGAACGCATCGCAACC | hmm | |
| 4607309:4607334 | + | 2.7 | ATTGCAAGCGCGTTGCTTGCAATA | hmm | |
| 4808670:4808691 | - | 0.5 | CGCTGCTGGTCGTGCGCAAT | hmm | |
| 4980215:4980236 | + | 1.8 | GCTGTGAGTCCAGTGCAACC | hmm | |
| 4980215:4980235 | + | 1.4 | GCTGTGAGTCCAGTGCAAC | hmm | |
| 5049794:5049815 | + | 1.5 | ACTGCAAGTGGCCTGAAATG | hmm | |
| 5191350:5191371 | - | 2.6 | GGCTGCGTACGGTCCGCAAC | hmm | |
| 5426997:5427016 | + | 1.6 | GTTGCAAATCCTGCAACG | hmm | |
| 5542066:5542089 | + | 0.6 | GTTGCGTACCTCTTTGTGCAAA | hmm | |
| 5607310:5607330 | + | 1.2 | TCTGCTAATTAATGCAATG | hmm | |
| 5853841:5853861 | + | 1.2 | GCTGCACGCCACCGGCAAC | hmm | |
| 5988512:5988532 | - | 0.7 | TGGTGCGAACAGACCGCAA | hmm | |
| 6156139:6156160 | + | 0.2 | GCTGCGTCGTCTGCGCAACT | hmm | |
| 6444303:6444323 | + | 1.0 | GTTGCGACGCTCCGGCAAG | hmm | |
| 6501061:6501082 | + | 1.0 | TGTGCGAAAGTTTCGAAATC | hmm | |
| 6527779:6527800 | + | 0.7 | TTTGCACGTCCATGTGCAAC | hmm | |
| 6551185:6551206 | + | 1.0 | GCTGCGCGCCACCGGCAACC | hmm | |
| 6879128:6879149 | + | 1.3 | CGTGCGGGTTCGTCGCAATG | hmm | |
| 7135224:7135245 | + | 8.6 | ATTGCGAGTGATGTGCAATA | hmm | |
| 7135224:7135245 | - | 5.0 | TATTGCACATCACTCGCAAT | hmm | |
| 7147165:7147185 | - | 0.4 | AGCTGCGACTGCTGCGCAA | hmm | |
| 7378314:7378334 | + | 5.5 | GCTGCATATGATGTGCAAG | hmm | |
| 7632874:7632895 | + | 0.3 | ACTGGGTGACCAACGCAATG | hmm | |
| 7677811:7677831 | + | 1.3 | AGTGCAGTCGGAGTGCAAT | hmm | |
| 7717826:7717847 | - | 0.8 | CCGTGCCACCAAACCGCAAT | hmm | |
| 7964705:7964726 | + | 0.5 | GTTGTCAAGAGTCTGCAACC | hmm | |
| 8086284:8086305 | - | 1.0 | ACTTTCGTGGGAGAGGCAAT | hmm | |
| 8619293:8619313 | - | 3.5 | TGGTGCGAGGGAGACGCAA | hmm | |
| 144375:144397 | + | 0.2 | TCCCAGCGCCTTCCACCGGCG | hmm | |
| 150348:150368 | - | 3.9 | TGGCCCAGCCCTGCGGGAC | hmm | |
| 144375:144397 | + | 0.2 | CCTGCGAGACCAGGCTGCAAC | hmm | |
| 214535:214555 | + | 0.8 | CTTGCCTGGAGAGCGCAAA | hmm | |
| 233872:233893 | + | 1.5 | CCTGCGCGGCTGCAGCAACA | hmm | |
| 296302:296322 | - | 0.3 | GACTGCGCAAGGACCGCAA | hmm | |
| 12816:12837 | - | 2.4 | GAATCCGGGCGGCCGAGTCC | hmm | |
| 12816:12837 | - | 2.4 | ACCTGCGCAAGTAGCGCAAC | hmm | |
| 12707:12728 | + | 0.4 | ACTGCGGGTAGACCGCAACG | hmm | |
| 3094:3111 | - | 21.87272925 | TTGCAAACGCAACTCAA | pwm | |
| 7077:7094 | + | 19.91187529 | TTGCGTGGTATCGGCAG | pwm | |
| 380044:380061 | - | 21.59762201 | CTGCAACGCCCTTGCAA | pwm | |
| 579958:579975 | + | 21.44234378 | TTGCGAACAGTGTGCAA | pwm | |
| 986989:987006 | + | 22.87772993 | GTGCAAGAGATTTGCAA | pwm | |
| 986989:987006 | - | 20.56787467 | GTGCAAGAGATTTGCAA | pwm | |
| 1139251:1139268 | + | 22.50576115 | CTGCGAGTCATATGCGA | pwm | |
| 1143866:1143883 | + | 20.69840623 | TTCCGAGTGCTTTGCGA | pwm | |
| 1294824:1294841 | - | 19.94554531 | TTCCGTACACCTCGAAA | pwm | |
| 1487080:1487097 | + | 22.37522959 | TTGCGGGTCGTATGCCG | pwm | |
| 1752815:1752832 | - | 22.87772993 | TTGGAGACCCCTCGCAA | pwm | |
| 2284995:2285012 | + | 22.12486901 | TTGCGACGCTAGTGCAG | pwm | |
| 2363687:2363704 | + | 21.59762201 | TCGCGGGTGTTTTGCAG | pwm | |
| 2810991:2811008 | + | 20.84476109 | CTGCATCGCTTGCGCAA | pwm | |
| 3410565:3410582 | + | 21.09512167 | TTACGTGACGTATGCAG | pwm | |
| 3504499:3504516 | + | 20.72315289 | TTCAGACTTGTTTGCAG | pwm | |
| 3844032:3844049 | + | 20.31751409 | TTGAACGTCTTGCGCAG | pwm | |
| 4697690:4697707 | - | 23.90747727 | CTGCACATCACTTGCAC | pwm | |
| 5261087:5261104 | + | 21.09512167 | TCGCAACGCCTTCGCAA | pwm | |
| 5711374:5711391 | - | 21.96959079 | ATGCGCAAGACGCGCAA | pwm | |
| 5780505:5780522 | + | 25.55955397 | TTGCAAGCTATATGCAA | pwm | |
| 5780505:5780522 | - | 20.56787467 | TTGCAAGCTATATGCAA | pwm | |
| 6206722:6206739 | - | 21.34548224 | TTGGCAACGTCTTGCAA | pwm | |
| 6568600:6568617 | - | 19.94554531 | TGGCACAAGCCACGCGA | pwm | |
| 6939409:6939426 | + | 20.6647362 | TTGCATGTATTCGGCAA | pwm | |
| 7273946:7273963 | + | 19.82393711 | GTGCGAGTCGCATGCGA | pwm | |
| 7388442:7388459 | - | 23.27444537 | CTGCGAAAGTGTTGCAA | pwm | |
| 8542818:8542835 | + | 21.87272925 | TTGAGTTGCGTTTGCAA | pwm | |
| 350541:350562 | + | 0.2 | ACTGCGTGTCCAACGAAATG | hmm | |
| 367789:367800 | + | 0.2 | GTTGCGCAAT | hmm | |
| 380042:380062 | + | 2.2 | GCTGCAACGCCCTTGCAAC | hmm | |
| 579956:579977 | + | 6.1 | ATTGCGAACAGTGTGCAATT | hmm | |
| 579956:579977 | - | 3.1 | AATTGCACACTGTTCGCAAT | hmm | |
| 701559:701580 | - | 1.2 | ATGTGCGGAGTTACAGCAAT | hmm | |
| 704635:704656 | + | 2.2 | ATCGCATGGCATCGGCAATG | hmm | |
| 762282:762303 | + | 0.3 | CGTGCGTCACTTGGGCAATC | hmm | |
| 776470:776491 | - | 0.2 | GGTTGAGCGCCATGAGCAAT | hmm | |
| 986987:987007 | + | 4.7 | AGTGCAAGAGATTTGCAAA | hmm | |
| 1610526:1610547 | + | 0.5 | GATGCGCCGTACCCGCAACG | hmm | |
| 1623756:1623775 | - | 1.2 | GGTTGCAACCCTCTGCAA | hmm | |
| 1886444:1886465 | + | 4.2 | CGTGCGCAGGAGGCGCAATT | hmm | |
| 2045203:2045223 | - | 0.5 | AGCTGCGGCCCACCCGCAA | hmm | |
| 2368276:2368297 | - | 0.5 | CTCTGCGCAGTCGCGGCAAT | hmm | |
| 2681161:2681182 | - | 3.2 | AGTTGCATCCTTGATGCAAC | hmm | |
| 2681161:2681182 | + | 2.4 | GTTGCATCAAGGATGCAACT | hmm | |
| 2723765:2723785 | - | 1.6 | TGCTGCACAAGGAGTGCAA | hmm | |
| 2810989:2811010 | + | 1.6 | TCTGCATCGCTTGCGCAACG | hmm | |
| 2997621:2997642 | - | 0.2 | GAGTGCACGCCTTGCGTAAT | hmm | |
| 3005171:3005189 | - | 1.6 | CGTTGCAACATATGCAA | hmm | |
| 3005170:3005189 | + | 1.6 | GTTGCATATGTTGCAACG | hmm | |
| 3005147:3005167 | + | 1.4 | GTTGAGCGATATACGCAAT | hmm | |
| 3314449:3314469 | + | 0.7 | TATGCGAGCCACTGGTAAC | hmm | |
| 3406564:3406584 | + | 0.2 | GTTGCGGGTCAGCTCCAAG | hmm | |
| 3410563:3410584 | - | 1.4 | GGCTGCATACGTCACGTAAT | hmm | |
| 4457648:4457668 | - | 0.3 | GATTGCCGGGTTCCGGCAA | hmm | |
| 4825851:4825871 | - | 1.3 | GCCTGCGCGAGCTGTGCAA | hmm | |
| 5056636:5056656 | - | 3.4 | TCCTGCGATCGATGCGCAA | hmm | |
| 5261085:5261106 | - | 2.5 | GGTTGCGAAGGCGTTGCGAT | hmm | |
| 5276853:5276874 | - | 1.0 | AGCTGCGACAGATCAGCAAC | hmm | |
| 5390735:5390754 | + | 1.1 | GTTGCACATGATGCAACG | hmm | |
| 5505013:5505033 | - | 0.5 | AGATGCGATCACTCCGCAA | hmm | |
| 5618561:5618581 | + | 2.6 | CATGCGATCTTGCCGCAAG | hmm | |
| 5705408:5705429 | - | 0.8 | ACATGCGAAGAATGCCCAAT | hmm | |
| 5711372:5711392 | + | 0.9 | CATGCGCAAGACGCGCAAA | hmm | |
| 5780503:5780523 | + | 6.6 | ATTGCAAGCTATATGCAAG | hmm | |
| 5780503:5780524 | - | 5.0 | TCTTGCATATAGCTTGCAAT | hmm | |
| 5798920:5798940 | - | 2.8 | TTTTGCATAGTAACGGCAA | hmm | |
| 5861206:5861227 | + | 2.4 | GCTGCGCGGATACCGCAACG | hmm | |
| 5922863:5922883 | + | 0.4 | CCTGCGCAAGAACTGGAAC | hmm | |
| 5945737:5945761 | - | 1.0 | CTTTGCGCATTAAACGACGCAAT | hmm | |
| 6192989:6193010 | + | 3.9 | ACTGCAAGGATGTGGCAATG | hmm | |
| 6206886:6206908 | - | 1.1 | CCTTGCGGAAGATTTCTGCAA | hmm | |
| 6213386:6213406 | + | 1.2 | TTTGCATTCTTGCAGCAAG | hmm | |
| 6611062:6611083 | - | 0.7 | ATTTGCTGGGTAAATTCAAT | hmm | |
| 6939407:6939428 | + | 4.0 | GTTGCATGTATTCGGCAATC | hmm | |
| 6939407:6939428 | - | 3.4 | GATTGCCGAATACATGCAAC | hmm | |
| 7184113:7184133 | + | 1.9 | CGTGCATGCCATCGGCAAG | hmm | |
| 7388440:7388460 | + | 5.5 | TCTGCGAAAGTGTTGCAAG | hmm | |
| 7626850:7626862 | - | 1.5 | GGTTGCGCAAT | hmm | |
| 7626851:7626862 | - | 1.1 | GGTTGCGCAA | hmm | |
| 8195012:8195033 | - | 2.0 | CCCTGCGAGTCTCCCGCTAT | hmm | |
| 8256896:8256917 | + | 2.4 | GTTGCTGGCATGACGCAATT | hmm | |
| 8361447:8361468 | - | 1.6 | GCCTGCGAAAGCTCTGCGAT | hmm | |
| 14437:14454 | + | 20.68948287 | TTGCGTGGCCTGCGCAC | pwm | |
| 2131776:2131793 | + | 22.49683779 | TTGCATCTGGTGCGCAC | pwm | |
| 2617046:2617063 | - | 22.99933813 | CTGCATATAGGTTGCAA | pwm | |
| 2748846:2748863 | - | 20.29276743 | TTGCCATAAACTGGCAA | pwm | |
| 3275839:3275856 | - | 24.52980662 | CTGCAAAGTACTTGCAA | pwm | |
| 3486122:3486139 | - | 20.56787467 | GCGCAAACAACGCGCAA | pwm | |
| 3572803:3572820 | - | 21.34726143 | CTGCACATCCGTCGCAC | pwm | |
| 3682731:3682748 | + | 20.31751409 | TTGCGGCTTGAATGCAG | pwm | |
| 4116966:4116983 | + | 22.90247659 | TGGCGACGGGTTTGCAG | pwm | |
| 4251151:4251168 | - | 22.12486901 | TTGCGTGAGCGTCGCAA | pwm | |
| 4512741:4512758 | + | 19.81501375 | ATGCGACGCGTACGCAC | pwm | |
| 4527029:4527046 | - | 20.31751409 | GTTCGTATGCCTTGCAA | pwm | |
| 4607612:4607629 | - | 20.72315289 | CTGCAAACAAGTCTGAA | pwm | |
| 4893266:4893283 | + | 19.94554531 | TTGCAAGTTGTACAAAG | pwm | |
| 5053370:5053387 | + | 20.19590589 | TTGCGTGTAGTTTTCGA | pwm | |
| 5524521:5524538 | - | 21.22565323 | TCGCACTCACCTTGCAA | pwm | |
| 5994039:5994056 | - | 20.72315289 | CTGCAATAGAGTCGCAG | pwm | |
| 6212106:6212123 | - | 20.22065255 | TTGCGAACGCGTCGCCT | pwm | |
| 6598144:6598161 | + | 21.09512167 | TTGCGAGACGTACGGAG | pwm | |
| 7340204:7340221 | - | 22.47209113 | TTGCACATATATTGCAA | pwm | |
| 7362849:7362866 | + | 20.31751409 | CTGCGACGCATCCGCAA | pwm | |
| 7637353:7637370 | + | 24.55455329 | TTGCATGCTGTTCGCAA | pwm | |
| 7778803:7778820 | + | 20.82001443 | TTGCGGGTGATGTCCAG | pwm | |
| 31095:31116 | - | 1.8 | CCCTGCCGATCTTGTGCAAC | hmm | |
| 162868:162889 | - | 2.6 | GCTTGAGAACTTCACGCAAT | hmm | |
| 238988:239010 | - | 0.8 | TTCTGCGGACCATTTCGCAAT | hmm | |
| 545120:545140 | + | 0.5 | GCTGCGCGACTACGGCAAC | hmm | |
| 600578:600599 | - | 2.1 | TCATGCGAGAAAGGTGAAAT | hmm | |
| 639772:639793 | + | 0.2 | GCTGTGAGCGCAGCGCAACA | hmm | |
| 723949:723970 | - | 3.8 | TACTGCGGGTATGTTGCAAC | hmm | |
| 884592:884612 | - | 2.3 | AATTGCAAAATTCTGCAAT | hmm | |
| 884592:884612 | + | 2.2 | ATTGCAGAATTTTGCAATT | hmm | |
| 1346343:1346364 | - | 0.6 | TCCTGCTAACCTTGTGTAAC | hmm | |
| 1380306:1380327 | - | 2.4 | ACCTGCGTGAACTCCGCAAC | hmm | |
| 2111841:2111863 | + | 1.9 | CTTGCGAGAACTTTCTGCAAG | hmm | |
| 2131775:2131795 | - | 3.1 | TGGTGCGCACCAGATGCAA | hmm | |
| 2419969:2419990 | + | 0.7 | GCTGCGAGGTGACTGCCATG | hmm | |
| 2541213:2541233 | + | 1.5 | TCTGCAAGGCCTCGGCAAG | hmm | |
| 2606829:2606849 | + | 4.8 | CTTGCATAGTAACCGCAAG | hmm | |
| 2617044:2617065 | + | 4.5 | CCTGCATATAGGTTGCAATA | hmm | |
| 2748844:2748865 | - | 2.7 | GTTTGCCAGTTTATGGCAAT | hmm | |
| 2748844:2748864 | + | 0.1 | ATTGCCATAAACTGGCAAA | hmm | |
| 3062112:3062132 | - | 3.8 | TGTTGCCAAGCTGATGCAA | hmm | |
| 3093293:3093313 | + | 1.7 | GATGCGAGCCTTGAGCAAG | hmm | |
| 3165111:3165135 | - | 2.2 | CCCTGCGAGCCAGTTCACGCAAT | hmm | |
| 3275837:3275857 | + | 5.6 | TCTGCAAAGTACTTGCAAG | hmm | |
| 3375183:3375209 | - | 1.6 | CGTTGCAAGGTGGGGACAATGCAAT | hmm | |
| 3459017:3459037 | - | 0.2 | TCTTGCTCATCATGGGCAA | hmm | |
| 3459016:3459036 | + | 0.1 | CTTGCCCATGATGAGCAAG | hmm | |
| 3682729:3682750 | - | 4.0 | GTCTGCATTCAAGCCGCAAT | hmm | |
| 3765728:3765749 | - | 1.8 | AAGTGCGATCAACGTACAAT | hmm | |
| 4089615:4089636 | - | 2.6 | TCGTGCTCGTCAACTGCAAC | hmm | |
| 4117659:4117679 | + | 2.8 | GGTGCGATGCTGGTGCAAA | hmm | |
| 4157943:4157964 | + | 0.1 | ATTGTGAAGCCCTGGCAATT | hmm | |
| 4251149:4251170 | - | 4.5 | GCTTGCGACGCTCACGCAAT | hmm | |
| 4251149:4251169 | + | 3.1 | ATTGCGTGAGCGTCGCAAG | hmm | |
| 4510654:4510675 | + | 1.7 | ACTGGAAGTTCAATGCAATG | hmm | |
| 4748220:4748238 | + | 0.8 | TCTGCGACAAGTGCAAG | hmm | |
| 4750344:4750365 | + | 1.6 | CCTGCTCGACATCCGCAACT | hmm | |
| 4960103:4960123 | - | 1.7 | CAATGCGCGGTTTCCGCAA | hmm | |
| 5025303:5025322 | + | 2.4 | GTTGCGAATGATGCAACA | hmm | |
| 5025324:5025345 | - | 1.9 | CTTTGAGCGACATACGCAAT | hmm | |
| 5092635:5092656 | + | 2.1 | GCTGCACGCCTTCCGCAACG | hmm | |
| 5140842:5140862 | + | 0.4 | AATGCGCGCCACCGGCAAC | hmm | |
| 5295523:5295543 | + | 0.8 | CTTGCGTAACCACTACAAC | hmm | |
| 5296131:5296151 | + | 0.5 | CCTGCGCGTCTTCGGCAAC | hmm | |
| 5296356:5296377 | + | 1.3 | ACTGCAGCCCTGCCGCAATC | hmm | |
| 6334332:6334352 | + | 0.5 | GTTGCGCGGGATCTTCAA | hmm | |
| 6503279:6503300 | - | 3.0 | TTTTCCGAGAGTCGTGCAAC | hmm | |
| 6660655:6660678 | - | 2.0 | CCGTGCGAGTCATATCCGCAAT | hmm | |
| 7102983:7103002 | - | 1.8 | TTCTGCAAATCGTCGCAA | hmm | |
| 7340202:7340223 | - | 5.4 | AGTTGCAATATATGTGCAAT | hmm | |
| 7340202:7340223 | + | 4.2 | ATTGCACATATATTGCAACT | hmm | |
| 7362847:7362868 | + | 2.4 | CCTGCGACGCATCCGCAACA | hmm | |
| 7432071:7432092 | + | 3.8 | CATGCGTGCCAGGGGCAATC | hmm | |
| 7637351:7637372 | - | 6.4 | TATTGCGAACAGCATGCAAT | hmm | |
| 7637351:7637372 | + | 4.7 | ATTGCATGCTGTTCGCAATA | hmm | |
| 7848194:7848215 | - | 2.2 | TATTGCAGTCCGACTGCAAT | hmm | |
| 7848194:7848215 | + | 2.1 | ATTGCAGTCGGACTGCAATA | hmm | |
| 8075478:8075498 | + | 1.8 | CTTGCGAGGACGCGCAACG | hmm |