General information
| Regulator | NuR |
|---|---|
| Gene identifier | SCO4180 - SCD66.17 |
| Family | Fur |
| Regulation type | Repressor |
| Function | Nickel-responsive regulator |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 4 sites.
Position Frequency Matrix
PFM| T | 4 | 4 | 0 | 0 | 0 | 1 | 0 | 3 | 1 | 1 | 4 | 2 | 3 | 0 | 0 | 0 | 0 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 0 | 0 | 4 | 0 | 2 | 0 | 3 | 1 | 1 | 2 | 0 | 1 | 0 | 4 | 0 | 0 | 1 |
| C | 0 | 0 | 0 | 4 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 4 | 0 | 0 |
| A | 0 | 0 | 0 | 0 | 2 | 3 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 4 | 3 |
Position Weight Matrix
PWM| T | 2.14 | 2.14 | -1.32 | -1.32 | -1.32 | 0.49 | -1.32 | 1.77 | 0.49 | 0.49 | 2.14 | 1.26 | 1.77 | -1.32 | -1.32 | -1.32 | -1.32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | -1.32 | -1.32 | 2.14 | -1.32 | 1.26 | -1.32 | 1.77 | 0.49 | 0.49 | 1.26 | -1.32 | 0.49 | -1.32 | 2.14 | -1.32 | -1.32 | 0.49 |
| C | -1.32 | -1.32 | -1.32 | 2.14 | -1.32 | -1.32 | 0.49 | -1.32 | 1.26 | -1.32 | -1.32 | -1.32 | 0.49 | -1.32 | 2.14 | -1.32 | -1.32 |
| A | -1.32 | -1.32 | -1.32 | -1.32 | 1.26 | 1.77 | -1.32 | -1.32 | -1.32 | 0.49 | -1.32 | 0.49 | -1.32 | -1.32 | -1.32 | 2.14 | 1.77 |
Hidden Markov Model (HMM)
| Consensus | -TTGCGAG-2-A-2-TGCAAT- | TTGCGAG-2-A-2-TGCAAT |
|---|---|---|
| Alignment length | 20 | 19 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
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| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| SCO6451 | -32 | + | ATTGCGAGTGATGTGCAAT | EMSA | Y. Jun An et al. (2009) |
| SCO3159 | -19 | + | CTTGCGAACGAGTTGCAAC | EMSA | Y. Jun An et al. (2009) |
| SCO2633 | -22 | + | GTTGCAAGGCTTTTGCAAT | EMSA | Y. Jun An et al. (2009) |
| SCO0999 | -19 | - | GCTGCATACAACACGCAATA | EMSA | Y. Jun An et al. (2009) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|