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General information

Regulator	OsdR
Gene identifier	SCO0204 - SCJ12.16c
Family	LuxR
Regulation type	Activator/repressor
Function	Development and stress management regulator
Organism	Streptomyces coelicolor

External links

Sequence logo

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Based on 6 sites.

PFM
PWM

Position Frequency Matrix

PFM


T	0	0	0	0	0	0	2	1	0	0	1	0	0	0	5
G	5	6	6	0	0	5	0	0	0	6	5	0	0	0	0
C	0	0	0	5	6	1	0	5	6	0	0	6	6	6	1
A	1	0	0	1	0	0	4	0	0	0	0	0	0	0	0

Position Weight Matrix

PWM


T	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	0.79	0.09	-1.32	-1.32	0.09	-1.32	-1.32	-1.32	1.90
G	1.90	2.14	2.14	-1.32	-1.32	1.90	-1.32	-1.32	-1.32	2.14	1.90	-1.32	-1.32	-1.32	-1.32
C	-1.32	-1.32	-1.32	1.90	2.14	0.09	-1.32	1.90	2.14	-1.32	-1.32	2.14	2.14	2.14	0.09
A	0.09	-1.32	-1.32	0.09	-1.32	-1.32	1.62	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32	-1.32

Predictions

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Score:

Animate
Node Repulsion
Ideal Edge Length

Curated binding sequences
Predicted binding sequences

Gene ID	Location	Orientation	Binding sequence	Method	Reference
SCO0204	-64	+	AGGGCCGGTCGGCCCC	EMSA	M. Urem et al. (2016)
SCO0200	-83	+	GGGGCCGACCGTCCCT	EMSA	M. Urem et al. (2016)
SCO0208	-86	+	CGGGCCGACCGGCCCT	EMSA	M. Urem et al. (2016)
SCO5978	-51	+	CGGGACCTTCGGCCCT	EMSA	M. Urem et al. (2016)
SCO2637	-37	+	AGGGCCGGTCGGCCTT	EMSA	M. Urem et al. (2016)
SCO6041	-35	+	GGGGCCGTCCGGCCCC	EMSA	M. Urem et al. (2016)

Region	Location	Orientation	Score	Binding sequence	Method