General information
| Regulator | OsdR |
|---|---|
| Gene identifier | SCO0204 - SCJ12.16c |
| Family | LuxR |
| Regulation type | Activator/repressor |
| Function | Development and stress management regulator |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 6 sites.
Position Frequency Matrix
PFM| T | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 5 | 6 | 6 | 0 | 0 | 5 | 0 | 0 | 0 | 6 | 5 | 0 | 0 | 0 | 0 |
| C | 0 | 0 | 0 | 5 | 6 | 1 | 0 | 5 | 6 | 0 | 0 | 6 | 6 | 6 | 1 |
| A | 1 | 0 | 0 | 1 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Position Weight Matrix
PWM| T | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | 0.79 | 0.09 | -1.32 | -1.32 | 0.09 | -1.32 | -1.32 | -1.32 | 1.90 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 1.90 | 2.14 | 2.14 | -1.32 | -1.32 | 1.90 | -1.32 | -1.32 | -1.32 | 2.14 | 1.90 | -1.32 | -1.32 | -1.32 | -1.32 |
| C | -1.32 | -1.32 | -1.32 | 1.90 | 2.14 | 0.09 | -1.32 | 1.90 | 2.14 | -1.32 | -1.32 | 2.14 | 2.14 | 2.14 | 0.09 |
| A | 0.09 | -1.32 | -1.32 | 0.09 | -1.32 | -1.32 | 1.62 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
Loading...
| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| -64 | + | AGGGCCGGTCGGCCCC | EMSA | M. Urem et al. (2016) | |
| -83 | + | GGGGCCGACCGTCCCT | EMSA | M. Urem et al. (2016) | |
| -86 | + | CGGGCCGACCGGCCCT | EMSA | M. Urem et al. (2016) | |
| -51 | + | CGGGACCTTCGGCCCT | EMSA | M. Urem et al. (2016) | |
| -37 | + | AGGGCCGGTCGGCCTT | EMSA | M. Urem et al. (2016) | |
| -35 | + | GGGGCCGTCCGGCCCC | EMSA | M. Urem et al. (2016) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|---|---|---|---|---|
| 127016:127031 | - | 27.18088605 | AGGGCCGGGCGGCCC | pwm | |
| 158447:158462 | - | 24.85269897 | GAGGCCGGTCGGCCC | pwm | |
| 158696:158711 | + | 24.85269897 | GGGCCGACGGTCCCT | pwm | |
| 165929:165944 | - | 25.08973817 | GGGGCCGGTCGACCC | pwm | |
| 168649:168664 | - | 26.89709309 | TGGGCCGGTCGGCCC | pwm | |
| 190914:190929 | + | 28.31213059 | GGGCCGACCGTCCCT | pwm | |
| 195525:195540 | - | 30.11948551 | AGGGCCGGTCGGCCC | pwm | |
| 197063:197078 | + | 25.83693165 | GGGCCGTCCAGCCCT | pwm | |
| 197119:197134 | + | 30.11948551 | GGGCCGACCGGCCCT | pwm | |
| 204337:204352 | + | 26.07397085 | GGGCCATCCGGCCCT | pwm | |
| 246786:246801 | + | 25.83693165 | GCGCCGTCCGGCCCT | pwm | |
| 293295:293310 | - | 26.07397085 | AGGGCCGCACGGCCC | pwm | |
| 303908:303923 | + | 24.85269897 | GGGCGGACCGGCCCC | pwm | |
| 551649:551664 | - | 27.18088605 | AGGGCCGGCCGGCCC | pwm | |
| 551670:551685 | + | 26.66005389 | GGACCGACCGGCCCT | pwm | |
| 551788:551803 | + | 25.08973817 | GGGCCGACCGTCCCG | pwm | |
| 630945:630960 | - | 25.08973817 | AGGGCCGGTCGACCT | pwm | |
| 899305:899320 | - | 25.37353113 | GGGGCCGGCCGGCCC | pwm | |
| 2011629:2011644 | - | 26.66005389 | ACGGCCGGTCGGCCC | pwm | |
| 2520213:2520228 | - | 25.08973817 | GGGGGCGGTCGGCCC | pwm | |
| 2600267:2600282 | - | 24.85269897 | GGGCCCGGTCGGCCC | pwm | |
| 2865859:2865874 | - | 28.31213059 | AGGGCCGGTCGGCCT | pwm | |
| 3156367:3156382 | - | 27.18088605 | AGGGCCGGGCGGCCC | pwm | |
| 4287604:4287619 | + | 24.85269897 | GGGCCGACCGGCCAC | pwm | |
| 5390546:5390561 | - | 24.85269897 | GGGGCCGGTCCGCCC | pwm | |
| 5410911:5410926 | + | 24.85269897 | AGGCGGACCGGCCCT | pwm | |
| 5880960:5880975 | - | 25.83693165 | AGGGCAGGACGGCCC | pwm | |
| 5927674:5927689 | - | 25.08973817 | CGGGCCGGTCGGCCT | pwm | |
| 6085819:6085834 | - | 26.07397085 | CGGGCCGGACGGCCC | pwm | |
| 6632443:6632458 | + | 27.48900835 | GGGCCGTCCGGCCCC | pwm | |
| 121516:121531 | - | 25.68165343 | GGGGACGGACGGCCC | pwm | |
| 236680:236695 | - | 25.37353113 | GGGGCCGGGCGGCCC | pwm | |
| 720667:720682 | - | 26.89709309 | AGGGCCGGTCGGCCG | pwm | |
| 1130318:1130333 | - | 25.08973817 | GGGGCCGGTCGCCCC | pwm | |
| 1230948:1230963 | + | 25.83693165 | GGGCAGTCCGGCCCT | pwm | |
| 1257716:1257731 | - | 26.07397085 | CGGGCCGGACGGCCC | pwm | |
| 1268085:1268100 | - | 25.37353113 | GGGGCCGGCCGGCCC | pwm | |
| 1285210:1285225 | + | 27.48900835 | GGGCCGTCCGGCCCC | pwm | |
| 1511054:1511069 | + | 24.26661593 | CGGCCGTCCGGCCCC | pwm | |
| 1624910:1624925 | - | 24.26661593 | AGGGGCGGACGGCCT | pwm | |
| 1656231:1656246 | + | 28.31213059 | GGGACGACCGGCCCT | pwm | |
| 1753058:1753073 | + | 27.18088605 | GGGCCGCCCGGCCCT | pwm | |
| 1857094:1857109 | - | 24.85269897 | GGGGCGGGTCGGCCC | pwm | |
| 2056932:2056947 | - | 25.08973817 | CGGGCCGGTCGGCCT | pwm | |
| 2437457:2437472 | - | 24.85269897 | AGGGACGGTCGGGCC | pwm | |
| 2464264:2464279 | + | 27.18088605 | GGGCCGCCCGGCCCT | pwm | |
| 2552368:2552383 | + | 25.83693165 | GGTCCGTCCGGCCCT | pwm | |
| 2588106:2588121 | + | 25.08973817 | CGGCCGACCGGCCCC | pwm | |
| 3074458:3074473 | - | 25.08973817 | AGGGCCGCTCGTCCC | pwm | |
| 3089225:3089240 | - | 24.85269897 | GGGGCCGGTCGGGCC | pwm | |
| 3204745:3204760 | + | 25.37353113 | GGGCCGCCCGGCCCC | pwm | |
| 3219953:3219968 | + | 26.07397085 | GGGCCGTCCGGCCCG | pwm | |
| 3255552:3255567 | + | 26.89709309 | CGGCCGACCGGCCCT | pwm | |
| 3455458:3455473 | + | 24.85269897 | GGGCCGACCGGCCTC | pwm | |
| 4673297:4673312 | - | 24.26661593 | GGGGCCGGACGCCCC | pwm | |
| 4831665:4831680 | - | 26.66005389 | AGGGCCGGTCCGCCC | pwm | |
| 5703504:5703519 | + | 24.26661593 | GGGTCGTCCGGCCCC | pwm | |
| 6030145:6030160 | - | 25.37353113 | GGGGCCGGGCGGCCC | pwm | |
| 6271872:6271887 | - | 26.50477567 | GGGGCCGGTGGGCCC | pwm | |
| 6326813:6326828 | + | 24.85269897 | GGACCGACCGGCCCC | pwm | |
| 7004119:7004134 | + | 25.08973817 | GGGCCGACCGCCCCC | pwm | |
| 7289925:7289940 | - | 28.31213059 | GGGGCCGGTCGGCCC | pwm | |
| 7647623:7647638 | - | 24.85269897 | ACGGCCGGTGGGCCC | pwm | |
| 116653:116668 | - | 24.26661593 | AGGGCCGAACGGCCG | pwm | |
| 298029:298044 | - | 25.08973817 | TGGGCCGATCGGCCC | pwm | |
| 298030:298045 | + | 25.08973817 | GGGCCGATCGGCCCA | pwm | |
| 462729:462744 | + | 27.48900835 | GGGACGTCCGGCCCT | pwm | |
| 516820:516835 | - | 25.08973817 | TGGGCCGGTGGGCCC | pwm | |
| 538155:538170 | + | 27.48900835 | GGGCCGTCCGGCCCC | pwm | |
| 1132300:1132315 | + | 24.85269897 | GGGCCGACCGGCTCC | pwm | |
| 1601354:1601369 | + | 24.26661593 | GGGCCGTGCGGCCCC | pwm | |
| 1665703:1665718 | - | 24.26661593 | GGGGCCGGATGGCCC | pwm | |
| 2420041:2420056 | - | 24.85269897 | AGGGCCCATCGGCCC | pwm | |
| 2595809:2595824 | - | 26.07397085 | CGGGCCGGACGGCCC | pwm | |
| 2956763:2956778 | - | 25.08973817 | GGGGCCGGTCGGCCG | pwm | |
| 3156561:3156576 | + | 24.85269897 | GGGCCGATCAGCCCT | pwm | |
| 3271727:3271742 | + | 25.37353113 | GGGCCGCCCGGCCCC | pwm | |
| 3952467:3952482 | - | 26.89709309 | CGGGCCGGTCGGCCC | pwm | |
| 4019209:4019224 | - | 24.26661593 | GGGGCCGCACGGCCC | pwm | |
| 4075168:4075183 | - | 24.85269897 | GGGGCCGGTCGGCTC | pwm | |
| 4571600:4571615 | - | 24.26661593 | GGGGCCGGACGCCCC | pwm | |
| 5034089:5034104 | - | 24.26661593 | AGGGCCGGAGGACCC | pwm | |
| 5201208:5201223 | - | 25.08973817 | AGGGCCGGTGGACCC | pwm | |
| 5536815:5536830 | - | 24.26661593 | GGGGCCGCACGGCCC | pwm | |
| 5571175:5571190 | - | 26.89709309 | CGGGCCGGTCGGCCC | pwm | |
| 5886322:5886337 | + | 26.50477567 | AGGCCGACCGGCCCC | pwm | |
| 6028517:6028532 | + | 24.85269897 | GGGCCGACCGGGCCC | pwm | |
| 6338671:6338686 | - | 24.85269897 | AGTGCCGATCGGCCC | pwm | |
| 6338672:6338687 | + | 24.85269897 | GTGCCGATCGGCCCT | pwm | |
| 6475384:6475399 | + | 24.85269897 | AGGCCGACCGGGCCT | pwm | |
| 6946145:6946160 | + | 24.26661593 | GGGCCCTCCGCCCCT | pwm | |
| 7088985:7089000 | + | 24.85269897 | GGGCCGACCGGCCAC | pwm | |
| 7109956:7109971 | - | 25.08973817 | TGGGCCGATCGGCCC | pwm | |
| 7109957:7109972 | + | 25.08973817 | GGGCCGATCGGCCCA | pwm | |
| 7540352:7540367 | + | 25.08973817 | GGGGCGACCGGCCCC | pwm | |
| 8005290:8005305 | + | 24.85269897 | GGGCCGACCGGCCGC | pwm | |
| 8034612:8034627 | - | 25.08973817 | GGGGCCGGTCGGCCG | pwm |