LogoMotif

General information

Regulator	Rex
Gene identifier	SCO3320 - SCE68.18c
Family	Rex
Regulation type	Repressor
Function	Modulates respiratory genes in response to NADH/NAD(+) redox state
Organism	Streptomyces coelicolor

External links

Sequence logo

Logo

Based on 8 sites.

PFM
PWM

Position Frequency Matrix

PFM


T	0	8	0	0	1	0	0	0	0	6	8	0	0	0
G	8	0	8	0	0	2	5	1	8	2	0	0	0	0
C	0	0	0	2	0	4	3	5	0	0	0	8	0	8
A	0	0	0	6	7	2	0	2	0	0	0	0	8	0

Position Weight Matrix

PWM


T	-1.32	2.14	-1.32	-1.32	-0.15	-1.32	-1.32	-1.32	-1.32	1.77	2.14	-1.32	-1.32	-1.32
G	2.14	-1.32	2.14	-1.32	-1.32	0.49	1.54	-0.15	2.14	0.49	-1.32	-1.32	-1.32	-1.32
C	-1.32	-1.32	-1.32	0.49	-1.32	1.26	0.93	1.54	-1.32	-1.32	-1.32	2.14	-1.32	2.14
A	-1.32	-1.32	-1.32	1.77	1.96	0.49	-1.32	0.49	-1.32	-1.32	-1.32	-1.32	2.14	-1.32

Predictions

Scroll zoom

Score:

Animate
Node Repulsion
Ideal Edge Length

Curated binding sequences
Predicted binding sequences

Gene ID	Location	Orientation	Binding sequence	Method	Reference
SAV_4738	-76	+	TTGTGCACGCGTTCACAA	DNAse footprinting	X. Liu et al. (2017)
SAV_4260	-80	-	ATGTGAACGCGTTCACAA	DNAse footprinting	X. Liu et al. (2017)
SAV_2888	-136	-	TTGTGATACGGTTCACGA	DNAse footprinting	X. Liu et al. (2017)
SAV_4837	-146	+	TTGTGACCTGCTTCACAT	DNAse footprinting	X. Liu et al. (2017)
SAV_3016	-42	+	TCGTGAAAGCGTTCACAT	DNAse footprinting	X. Liu et al. (2017)
SCO3945	-92	+	TGTGAACGCGTTCACA	EMSA	D. Brekasis et al. (2003)
SCO3320	-80	-	TGTGCACGCGTTCACA	EMSA	D. Brekasis et al. (2003)
SCO4562	-107	+	TGTGACCTGCTTCACA	EMSA	D. Brekasis et al. (2003)

Region	Location	Orientation	Score	Binding sequence	Method