LogoMotif

General information

Regulator	SigR
Gene identifier	SCO5216 - SC7E4.13
Family	ECF
Regulation type	Sigma factor
Function	Responds to thiol-oxidative stress
Organism	Streptomyces coelicolor

External links

Sequence logo

Logo

Based on 35 sites.

Hidden Markov Model (HMM)


Consensus	GGAAT-19-GTT	GGAAT-18-GTT
Alignment length	27	26

Predictions

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Score:

Animate
Node Repulsion
Ideal Edge Length

Curated binding sequences
Predicted binding sequences

Gene ID	Location	Orientation	Binding sequence	Method	Reference
SCO0570	-63	-	GGAATGCCCCGGCGGCCGTCGGGGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO0882	-23	+	GGAATGTTCAACCGTGCGGCGTGGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO1513	-123	-	GGAATCCGGCGCCCGCCCCAGGCGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO1649	-32	-	GGAATCCGGCCAGCTCTGACGGGTGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO1869	-56	-	GGAATGAGAACGGCTGCTTGAACGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO1995	-30	-	GGAATAGCGGGTCCGGCGCGTGCGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO1997	-34	-	GGAATGCCCCACCCCGCAAGGGTGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO2161	-45	-	GGAATGAATCCGCGGTCCCGCCGGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO2254	-83	-	GGAATACCCGCCCTGAGAGTCTTTGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO2310	-62	+	GGAATAGTTGCCCCGGCGCACGAGGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO2634	-30	-	GGAATGGGCGGGCCGGTCGTTCGGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO2642	3	+	GGAATGGGTCGTGCCGTGTGGGCGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO2816	-65	+	GGAATAACCGGAGACCCCCTCCTGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO2912	28	-	GGAATCGATACGATGAGCCCATGGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO3083	-105	-	GGAATCACTGATCGGCGTAGCGTGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO3162	9	+	GGAATGGTGGACGGTCGGTGGCGGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO3187	-35	+	GGAATAGGTCACTATGGACCGTCGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO3297	-24	-	GGAATAACGGGTCGGGGGTCGCCGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO3442	-28	+	GGAATGCGCAGAGGTCCTCACCGGGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO3450	2	-	GGAATGCGGGTCAGGCAGAGGGGGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO3451	-8	+	GGAATGCCGCGTACGACTGGAGGGGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO4109	-10	+	GGAATCCCCCGCTCCGGCGCGGTCGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO4297	-64	+	GGAATGGTCCGGCGGGGCGGGCCCGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO4770	-44	+	GGAATGAGCCACGTCCACTTCCCGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO4956	-43	+	GGAATCGTCGGGAGCCCTCCCGTGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO5065	-33	-	GGAATACGGCCGCGGTCCTGCCACGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO5178	-44	+	GGAATGAAAAAGGCCATGGCAGTGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO5359	-105	+	GGAATAGTTCACCCCGCCCCCCGGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO5465	-53	+	GGAATAGCCCGCCCGGCCCGGAGGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO5796	-60	+	GGAATCTCCCCGGTGGTTCGCACGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO6061	-79	+	GGAATGGCGAAGGCCGGTGATCTCGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO6551	-45	-	GGAATGCGTCCGGGCTCGTGATCGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO6759	-252	+	GGAATCTTGAAGTCAATCGGTGTGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO7140	-29	+	GGAATGACGCACCCCGGACACGACGTT	ChIP-chip	M.S. Kim et al. (2012)
SCO7784	-102	+	GGAATGGACTCGGCATGGCCCTGGTT	ChIP-chip	M.S. Kim et al. (2012)

Region	Location	Orientation	Score	Binding sequence	Method