LogoMotif

General information

Regulator	SigU
Gene identifier	SCO2954 - SCE59.13c
Family	ECF
Regulation type	Sigma factor
Function	Modulating morphological differentiation
Organism	Streptomyces coelicolor

External links

Sequence logo

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Based on 12 sites.

HMM

Hidden Markov Model (HMM)


Consensus	TGAACG-17-CGTA	TGAACG-16-CGTA
Alignment length	27	26

Predictions

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Score:

Animate
Node Repulsion
Ideal Edge Length

Curated binding sequences
Predicted binding sequences

Gene ID	Location	Orientation	Binding sequence	Method	Reference
SCO0644	687496:687521	-	TGAACGCTCCGGCCCCCGGTTCCGTA	Homology searches	N.D. Gordon et al. (2008)
SCO0986	1040690:1040715	+	TGAACGGTGACGGCCCCGTGCACGTA	Homology searches	N.D. Gordon et al. (2008)
SCO1573	1683313:1683338	+	TGAACGCTCGCCCAGCACGGCGCGTA	Homology searches	N.D. Gordon et al. (2008)
SCO1576	1687283:1687308	-	TGAACGCGCCCGCACCCGATGTCGTA	Homology searches	N.D. Gordon et al. (2008)
SCO2495	2688017:2688042	+	TGAACGGACCGCCGGCGCCGGACGTA	Homology searches	N.D. Gordon et al. (2008)
SCO4110	4510915:4510940	-	TGAACGACCTGCTCTTCCGTCGCGTA	Homology searches	N.D. Gordon et al. (2008)
SCO4503	4922941:4922967	+	TGAACGCCTCGGCGCGCGAGGCACGTA	Homology searches	N.D. Gordon et al. (2008)
SCO4598	5023521:5023546	-	TGAACGCTGCGGTTCGACGATCCGTA	Homology searches	N.D. Gordon et al. (2008)
SCO5104	5543618:5543643	+	TGAACACCGTGTCGTGCGGCGCCGTA	Homology searches	N.D. Gordon et al. (2008)
SCO6647	7384498:7384523	-	TGAACGATCGGGAAGCCACTCACGTA	Homology searches	N.D. Gordon et al. (2008)
SCO7291	8097351:8097377	-	TGAACGCACCCCGGTGCCCCCGACGTA	Homology searches	N.D. Gordon et al. (2008)
SCO7373	8186305:8186331	-	TGAACGGCATCGACCTGACCCTGCGTA	Homology searches	N.D. Gordon et al. (2008)

Region	Location	Orientation	Score	Binding sequence	Method