General information
Regulator | ZuR |
---|---|
Gene identifier | SCO2508 - SCC121.11 |
Family | Fur |
Regulation type | Repressor |
Function | Zinc-responsive repressor |
Organism | Streptomyces coelicolor |
External links
Sequence logo
LogoPosition Frequency Matrix
PFMT | 6 | 0 | 0 | 1 | 2 | 1 | 6 | 0 | 0 | 6 | 5 | 6 | 5 | 1 | 1 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G | 0 | 6 | 1 | 0 | 0 | 1 | 0 | 0 | 2 | 0 | 1 | 0 | 0 | 0 | 0 |
C | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 6 | 0 | 0 | 0 | 0 | 1 | 5 | 0 |
A | 0 | 0 | 5 | 4 | 3 | 3 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 5 |
Position Weight Matrix
PWMT | 2.14 | -1.32 | -1.32 | 0.09 | 0.79 | 0.09 | 2.14 | -1.32 | -1.32 | 2.14 | 1.90 | 2.14 | 1.90 | 0.09 | 0.09 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G | -1.32 | 2.14 | 0.09 | -1.32 | -1.32 | 0.09 | -1.32 | -1.32 | 0.79 | -1.32 | 0.09 | -1.32 | -1.32 | -1.32 | -1.32 |
C | -1.32 | -1.32 | -1.32 | 0.09 | 0.09 | 0.09 | -1.32 | 2.14 | -1.32 | -1.32 | -1.32 | -1.32 | 0.09 | 1.90 | -1.32 |
A | -1.32 | -1.32 | 1.90 | 1.62 | 1.26 | 1.26 | -1.32 | -1.32 | 1.62 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | 1.90 |
Animate |
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Node Repulsion | |
Ideal Edge Length | |
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Gene ID | Location | Orientation | Binding sequence | Method | Reference |
---|---|---|---|---|---|
SCO0476 | 1 | - | TGAACATGATTTTCA | EMSA | D. Kallifidas et al. (2010) |
SCO0436 | -38 | + | TGAACATCGTTTTCA | EMSA | D. Kallifidas et al. (2010) |
SCO3428 | -13 | - | TGGAATTCATTTTCA | EMSA | D. Kallifidas et al. (2010) |
SCO2505 | 1 | - | TGACACTCATTTTCA | EMSA | D. Kallifidas et al. (2010) |
SCO7676 | -57 | + | TGAATGTCGTTTTCT | EMSA | D. Kallifidas et al. (2010) |
SCO7682 | -69 | - | TGATTATCATTTCTA | EMSA | D. Kallifidas et al. (2010) |
Region | Location | Orientation | Score | Binding sequence | Method |
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