General information
| Regulator | ZuR |
|---|---|
| Gene identifier | SCO2508 - SCC121.11 |
| Family | Fur |
| Regulation type | Repressor |
| Function | Zinc-responsive repressor |
| Organism | Streptomyces coelicolor |
External links
Sequence logo
Logo
Based on 6 sites.
Position Frequency Matrix
PFM| T | 6 | 0 | 0 | 1 | 2 | 1 | 6 | 0 | 0 | 6 | 5 | 6 | 5 | 1 | 1 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | 0 | 6 | 1 | 0 | 0 | 1 | 0 | 0 | 2 | 0 | 1 | 0 | 0 | 0 | 0 |
| C | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 6 | 0 | 0 | 0 | 0 | 1 | 5 | 0 |
| A | 0 | 0 | 5 | 4 | 3 | 3 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 5 |
Position Weight Matrix
PWM| T | 2.14 | -1.32 | -1.32 | 0.09 | 0.79 | 0.09 | 2.14 | -1.32 | -1.32 | 2.14 | 1.90 | 2.14 | 1.90 | 0.09 | 0.09 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| G | -1.32 | 2.14 | 0.09 | -1.32 | -1.32 | 0.09 | -1.32 | -1.32 | 0.79 | -1.32 | 0.09 | -1.32 | -1.32 | -1.32 | -1.32 |
| C | -1.32 | -1.32 | -1.32 | 0.09 | 0.09 | 0.09 | -1.32 | 2.14 | -1.32 | -1.32 | -1.32 | -1.32 | 0.09 | 1.90 | -1.32 |
| A | -1.32 | -1.32 | 1.90 | 1.62 | 1.26 | 1.26 | -1.32 | -1.32 | 1.62 | -1.32 | -1.32 | -1.32 | -1.32 | -1.32 | 1.90 |
| Animate |
|
| Node Repulsion | |
| Ideal Edge Length | |
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| Gene ID | Location | Orientation | Binding sequence | Method | Reference |
|---|---|---|---|---|---|
| SCO0476 | 1 | - | TGAACATGATTTTCA | EMSA | D. Kallifidas et al. (2010) |
| SCO0436 | -38 | + | TGAACATCGTTTTCA | EMSA | D. Kallifidas et al. (2010) |
| SCO3428 | -13 | - | TGGAATTCATTTTCA | EMSA | D. Kallifidas et al. (2010) |
| SCO2505 | 1 | - | TGACACTCATTTTCA | EMSA | D. Kallifidas et al. (2010) |
| SCO7676 | -57 | + | TGAATGTCGTTTTCT | EMSA | D. Kallifidas et al. (2010) |
| SCO7682 | -69 | - | TGATTATCATTTCTA | EMSA | D. Kallifidas et al. (2010) |
| Region | Location | Orientation | Score | Binding sequence | Method |
|---|